Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq141 365 5e-96 seq75 109 6e-19 seq2 95.1 1e-14 >seq141 Length=34748 Score = 365 bits (404), Expect = 5e-96 Identities = 548/766 (72%), Gaps = 12/766 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | |||||||||||| | ||| | | | | | ||||| ||| Sbjct 29695 TCATGCGTGTCGCCGTCGGTATCCACGGTCAGGACATCGCCAGCGCCATCGAGACCTACA 29754 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| |||||||||||||| |||||| |||| ||||| |||||||| ||||| Sbjct 29755 ACCTCATGTCGCAAAAGTACTTTACCCACGCCTCGCCCACCCTCTTCAACGCCGGTACCC 29814 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 |||||| ||| | ||| || ||||| || | |||||||| ||||| |||||||||| Sbjct 29815 CTCACCCGCAGCTCTCGTCGTGTTTCCTCGTCACCATGAAGGACGACTCCATCGACGGCA 29874 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| ||||||||| || ||| ||||||||| | |||||||||||| || Sbjct 29875 TCTACGACACGCTCAAGACCTGCGCCATGATCTCCAAGACCGCCGGTGGTATCGGTCTCA 29934 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || | | |||||| | ||| | || || || ||||| || | | | Sbjct 29935 ACATCCACTGCATCCGTGGCACTGGCTCCTACATTGCCGGCACCAACGGTGTTAGCAACG 29994 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || ||||||||||||||||||||||| ||||| |||||| |||||||||| Sbjct 29995 GTATCGTTCCCATGCTCCGCGTCTTCAACAACACCGCCCGCTACGTCGACCAGGGTGGCA 30054 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || ||||||||| | ||||| |||||| | ||| | | |||| Sbjct 30055 ACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCATGGCACTCGGACGTCTTTGAGT 30114 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TAC 53670 | ||||| || || ||| || ||| | || ||| | || ||| ||||| || || ||| Sbjct 30115 TCCTCGACCTCCGCAAGAACCACGGTAAGGAGGAGGTTCG-TGCTCGTGAGCTCTTCTAC 30173 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || || ||| |||| || ||||||||| | || ||| || ||| || |||| ||| Sbjct 30174 -GCCCTCTGGGTTCCCGATCTCTTCATGAAGCGTGTCGAGCAGAACGGTGACTGGTCCCT 30232 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACGAG- 53788 |||||||| |||||||||||||| ||| | | || |||||| || ||||| |||| Sbjct 30233 CATGTGCCCCAACGAGTGCCCCGGTCTCGCCGACTG-CTACGGCGACGAGTT---CGAGC 30288 Query 53789 ATGTAT-CGGACG-TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGG 53846 | | | || || |||| | ||||||| |||| | |||||||| | || Sbjct 30289 GTCTCTACGAGCGCTACGAGGCCGAGGGCCGTGCCAAGCGCACTGTCAAGGCTCAGAAGC 30348 Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906 | ||| | || |||||| || |||| ||||| || | || | ||| |||||||| Sbjct 30349 TCTGGTACGCCATCCTCGAGTCCCAGACCGAGACTGGTAACCCCTTCATCCTCTACAAGG 30408 Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 | | | |||| |||||||||||||||||| ||||| |||||| Sbjct 30409 ACGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAA 30454 Score = 159 bits (176), Expect = 4e-34 Identities = 532/813 (65%), Gaps = 40/813 (5%) Strand=Plus/Plus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAA 55197 |||||| ||| | ||||||||| || |||||||| || | ||| |||| |||||| Sbjct 30611 GAACCTCAACAAGATCATCGACATCAACTACTACCCCGTCGAGGAGGCTCGCAGGTCCAA 30670 Query 55198 CCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCT 55257 | | || || || ||||||| |||||||| ||||| | |||||| ||||||||| | Sbjct 30671 CATGCGCCATCGTCCCATCGGTATCGGTGTCCAGGGTCTCGCCGACGCCTTCATGATCAT 30730 Query 55258 CGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCA 55316 || | | ||||| ||| ||||| | ||| | |||||| || | || Sbjct 30731 GGGCTACGCTTTCGAGTCGCCCGAGGCTCGTCGTCTCAACGTCCAGATCTTCGAGAC-CA 30789 Query 55317 TCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCT-ATGAGCGAGGGGACCTACGAG 55375 ||||| || || |||||| ||||| | |||||| | |||| | || ||||||||| Sbjct 30790 TCTACCACGCCGCCCTCGAGCGATCGTGCGAGCTGGCTCAGGAGC-ACGGCACCTACGAG 30848 Query 55376 ACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGTCT 55435 || | | | ||||| ||| | |||| ||||||| ||| | ||||| ||| Sbjct 30849 ACCTACGCCGGCTCGCCCGCTTCCCAGGGTGAGCTCCAGTACGACATGTGGGGT--GTC- 30905 Query 55436 GACCCCATG-----TTTGACA--------AGTTGAAGCATGACATTCACTTGTGGGGCCT 55482 ||||| | |||| | || | ||| | || | | || || Sbjct 30906 -ACCCCCTCGAACCTTTGGGACTGGGCCGAGCTCAAGGCCAAGATCGCCAAGCACGGTCT 30964 Query 55483 ACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAA 55542 |||||||| || ||| | || || ||||| || || || || ||||||| ||||| Sbjct 30965 TCGCAACTCGCTCCTCCTCGCTCCCATGCCTACTGCCTCCACCAGTCAGATCCTGGGCTT 31024 Query 55543 CAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGA 55602 ||||||| |||||||| ||||| |||| |||||| ||| || || || ||||| Sbjct 31025 CAACGAGTGCTTCGAGCCTTACACCTCCAATATCTACTCGCGTCGTGTGCTCGCCGGTGA 31084 Query 55603 GTTT---GTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGA-TCAACAAGTGGA 55658 ||| ||| | | | | | ||| | || | | || || || ||||| Sbjct 31085 GTTCCAGGTCGTCAACCCCTGGTTGCTCCGCGAGCTCGTCGAGCAGGGTCT----GTGGA 31140 Query 55659 ACCCGCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG---G 55712 || || |||| || || || | | |||| || ||| ||||||| || | Sbjct 31141 ACGACACCATGAAGAACCGCATCATCGCCC---ACGGTGGTTCCATCCAGAACGTGCCCG 31197 Query 55713 AGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC 55772 || || || ||||| || | ||| ||| || |||||||| |||||| Sbjct 31198 GCATCCCCGACCGCATCAAGAAGCTGTACAAGACCGTCTGGGAGATCAGCCAGAAGGCCA 31257 Query 55773 TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832 | ||||||||| ||| || |||||||| | |||| |||||| ||||| || |||||| Sbjct 31258 TCATTGACATGGCTGCCGACCGTGGTGCTTTCATCTGCCAGTCGCAGTCGCTCAACATCC 31317 Query 55833 TCATGGAGA-ATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAG 55891 | | | | || | ||| || | | | |||||||||||| ||||| ||||||||| Sbjct 31318 ACCTTTCGGCACCCACCTTTGGTCA-GCTCACCTCGATGCACTTCTACGGATGGAAGAAG 31376 Query 55892 GGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 || |||||||| |||| ||||| || || ||| Sbjct 31377 GGTCTCAAGACCGGTACCTACTACCTCCGTACC 31409 >seq75 Length=98333 Score = 109 bits (120), Expect = 6e-19 Identities = 311/472 (66%), Gaps = 16/472 (3%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || ||||||||||| | ||| ||||||| ||||||||| |||| Sbjct 64470 AGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAACCGGAGAAG 64411 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC 74924 ||||| || |||||| || ||||| || || || | ||||| | || || ||| Sbjct 64410 AAGATACCCTCGACAGCGGCGAAGGCAACGAGACGCTCGGCGAAAGAGGC-GCGCTTGTC 64352 Query 74925 ----ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGC 74980 ||||| ||||||| ||||| || | ||||| | |||| || |||| || Sbjct 64351 GCTGATCCATCGGAGAGCCCAGTCAGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGC 64292 Query 74981 TTGGAAGAGG--CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAG 75038 | |||||| || || || ||||| || || | |||| || | || ||| Sbjct 64291 GTCAAAGAGGAACTCGC--GCTGCTCGGGCTCACGGATGTAGGTGTCGATGAGGAGCGAG 64234 Query 75039 TACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCT 75098 || |||||||| || || ||| | | |||| | ||||||| | || ||||| Sbjct 64233 TAGGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGGGCCTCG 64174 Query 75099 GCAATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCG 75156 || ||| || || ||||| || | | | ||||| ||||||| ||||| | Sbjct 64173 GCGGCCTGAACTTCAGAGCTGAAACGCTC--GACAAGGTTCTCGTTGACGATACCGTCGG 64116 Query 75157 AGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TT 75213 |||||||||| || || || || ||| ||||| ||||| | ||| |||| | Sbjct 64115 AGGCGGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGT 64056 Query 75214 TGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 ||||||| || | || ||| | | || || |||||| | |||||||| Sbjct 64055 TGTCCCAGTCGTGGAGATCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAA 64004 >seq2 Length=407147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| |||||||| ||||| ||||||| ||||||||| || ||| | ||||| Sbjct 62095 GTTGGCGAGCTTGGCGCCGTAACCGTTCCTACCACCGGTGACCTTGGCCTCGTTGTCGTC 62154 Query 119143 GTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 ||||||||| ||| | ||||| |||||||||||||||||||| Sbjct 62155 GTAGTTGGACGAGGTGAGGAGGTGACCAAAGATGAGCTCGGGGAT 62199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547110578837600