Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq25 107 2e-18 >seq25 Length=198755 Score = 107 bits (118), Expect = 2e-18 Identities = 446/704 (63%), Gaps = 40/704 (6%) Strand=Plus/Minus Query 29782 GAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGG 29841 ||||||||| ||| || ||||| | || | | ||| || || || || |||| Sbjct 54573 GAAATCCTCGTACTTGAAATCGTCGATATCCTTGATCTCCCTCTTGATGCTGAGCTTGGG 54514 Query 29842 AAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGAC 29901 || || || || ||||| ||||| ||||| ||| || |||| |||| ||| || Sbjct 54513 GAATGGCAACGGATCTCTCTCCAGCTGCACCTTCAACGGCTCGACGTGATCCTTGTACAC 54454 Query 29902 GTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29961 ||| || ||||||| | || |||||| ||| || | || || | || || Sbjct 54453 GTGCGCATCTCCCATGGCCAACACCAACTCTTTCGGCTCGCAATCCGTCACCTTGGCGAT 54394 Query 29962 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 30021 |||||| || | || | ||||| |||||||| || || || || || |||| || | Sbjct 54393 CATGTAGGTCAACAGCGCATAGCTCGCGATGTTGAACGGCACACCCAGACCCAAATCGCA 54334 Query 30022 CGACCTCTGGTAGAGCTGACACGAGAGCTCT------CCGTCGCTC-------------- 30061 || | |||||| | |||||| ||||| | | || |||| | Sbjct 54333 GGATCGCTGGTACATCTGACAGGAGAGGTGTTTCTTACCTTCGCCCTTGGCGTACGCGTC 54274 Query 30062 ----------ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCC 30108 ||| | ||||| | ||||| ||||| || || ||||||||||| | Sbjct 54273 GAGGTTGGACACGAAGAACTGCGCAAACATG---TGGCAAGGGGGCAGAGCCATGAGTTC 54217 Query 30109 CAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 | || || |||||||| |||| | | |||||| | || |||||||| | ||| Sbjct 54216 GAGATCCTTCGGGTTCCATGCGCTGAGCAAGATGCGTCGATCGGTGGGGTTGTTGCGGAT 54157 Query 30169 GAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGC-CCTCATG 30226 ||| | | | || || ||||| || || || ||| | ||| ||||| | || | Sbjct 54156 CTTGTCGATGAC-TTGGGCGAGCTGGTCTACGCCTTGCCCTGTGTAATCTGCGTCGCA-G 54099 Query 30227 TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30286 || ||||| ||| || || || | ||| ||||| ||||| || || |||| ||| || Sbjct 54098 TCGGTGTAGGATGCGCCAAAGTGTCGCCATTGGAAGCCGTAGACGGGGCCCAAGTCGCCT 54039 Query 30287 TCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAG 30346 || | ||| || ||| | ||| | || || | || ||||| ||||||| Sbjct 54038 TCACGGCGGTGGGAGAGGCCACGAGAGTCGAGGAATTCGCGCGATCCGTTACCGTCCCAA 53979 Query 30347 ATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 30406 || | || ||||| || | |||| || || | || || |||||||| || Sbjct 53978 ATATGAACTCCCTTGTCCGTGAGCAGCTTCGAATCGGTCTTGCCAGCTACGAACCAGAGA 53919 Query 30407 AGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30450 |||||||||| || | | ||||||| || |||||||| Sbjct 53918 AGCTCCTCCAGCACTCCGCGGAAGAAGACCCGTTTCGTCGTGAG 53875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406234081193904