Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq27 141 8e-29 seq18 118 9e-22 seq25 96.9 3e-15 seq3372 87.8 2e-12 >seq27 Length=198227 Score = 141 bits (156), Expect = 8e-29 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 ||||||||||| || || || || || ||||||||| | || || || || || || | Sbjct 159946 GCCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 160005 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||||| | ||||| | ||||| || ||||| ||||| || ||||| || ||||| Sbjct 160006 TCCGACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGAC 160065 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || |||||| | || | ||||| ||||| |||||||| | ||| |||| || ||| Sbjct 160066 CAGCAGCGTCTCATCTTTGCCGGTAAACAGTTGGAAGATGGACGAACCCTTTCGGACTAC 160125 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || |||||||| ||| | || ||||| | ||| | || ||||| || Sbjct 160126 AACATCCAGAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTCCGTGGTGGTAT 160178 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||||||| | || ||||| ||||| ||| | || Sbjct 160177 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAAGTTGAATCCTCG 160236 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || ||||| || || || || Sbjct 160237 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 160296 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || || ||| | || || | ||| ||||||| |||||| Sbjct 160297 CAACGTCTCATTTTCGCAGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAC 160356 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || | || | || ||||| | || ||||| || Sbjct 160357 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCGACTTCGTGGTGGTAT 160406 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||||||||| ||| | || ||||| || || || | || Sbjct 160405 ATGCAGATCTTTGTCAAGACTCTGACCGGAAAGACGATCACTCTCGAGGTTGAGTCCTCG 160464 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || ||||| || ||||| ||||| || ||||| || || Sbjct 160465 GACACGATCGACAACGTAAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCTGACCAG 160524 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||| || || | || || | || ||||||| |||||| Sbjct 160525 CAGCGACTCATCTTTGCCGGTAAGCAGCTCGAGGATGGCCGTACTCTTTCCGACTACAAC 160584 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||| ||||| || | || ||||| | || ||||| || Sbjct 160585 ATTCAGAAGGAGAGCACCTTGCACCTCGTGTTGCGACTCCGCGGTGGTAT 160634 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || ||| | || ||| | || || || |||| Sbjct 160633 ATGCAAATCTTTGTCAAGACGCTCACGGGAAAGACCATCACTTTGGAGGTCGAGTCGTCG 160692 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || || ||||| || || || |||||||| || Sbjct 160693 GATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 160752 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || || || ||||| ||| || ||| | || || |||||| Sbjct 160753 CAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGTACCCTGTCGGACTACAAC 160812 Query 27168 ATTCAAAAGGAG 27179 ||||| |||||| Sbjct 160813 ATTCAGAAGGAG 160824 >seq18 Length=238221 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| ||||||||||| | || || || || || || | || Sbjct 147293 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 147352 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| |||||||| ||||||||||| Sbjct 147353 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCCGATCAG 147412 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | || ||| | || | || || |||||| Sbjct 147413 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACACTCTCTGACTACAAC 147472 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || ||||| ||||| | ||| | || | ||| |||| |||||| Sbjct 147473 ATCCAGAAGGAATCGACGCTTCATCTCGTCCTCCGTCTGCGTGGTGGC 147520 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || ||||| ||||| | || Sbjct 147065 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCG 147124 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || |||||||| || || ||||| ||||| || || Sbjct 147125 GACACCATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAGGGCATCCCACCTGACCAG 147184 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||||| || | || ||| | ||| |||| || |||||| Sbjct 147185 CAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAAC 147244 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || | || | || |||| ||||| || Sbjct 147245 ATCCAGAAGGAGTCGACTCTTCACCTCGTGCTCCGCCTGCGTGGTGGTAT 147294 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || || || || ||||| | || Sbjct 226597 ATGCAGATCTTTGTTAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCG 226538 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || || || || || || || Sbjct 226537 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCAG 226478 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||| || || | || ||| | ||| |||| || |||||| Sbjct 226477 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAAC 226418 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | || | || | || |||| ||||| Sbjct 226417 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTCCGCCTGCGTGGTGG 226371 >seq25 Length=198755 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || || ||| | || || || || || || | || ||| | || || | ||||| Sbjct 152117 ACAGGTAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATCGACAATGTCAAGGCT 152176 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| || ||||| || ||||| || ||||| | || | |||||| || Sbjct 152177 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 152236 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| | ||| ||||||| |||||||| || |||||||||||||| || Sbjct 152237 CAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCTTGCAC 152296 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||| | || ||||| || Sbjct 152297 TTGGTCCTCCGTCTTCGTGGTGGTAT 152322 >seq3372 Length=309 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||||||||||||| | || || ||||| ||||| | ||| Sbjct 170 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCC 111 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || || || || || || || Sbjct 110 GACACAATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAG 51 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 |||||| | || | || || || || | |||||| Sbjct 50 CAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAAGAC 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434834612970240