Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq25 118 1e-21 >seq25 Length=198755 Score = 118 bits (130), Expect = 1e-21 Identities = 429/664 (65%), Gaps = 48/664 (7%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 ||| |||| ||||||||||| || | || || ||| | |||||||| || |||||| Sbjct 53869 CCGTTGCTCACGACGAAACGGGTCTTCTTCCGCGGAGTGCTGGAGGAGCTTCTCTGGTTC 53928 Query 34283 GTGAGGGGGGCCACGAACA---CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 || || || || || | | ||| |||| || | ||| || | || |||||| Sbjct 53929 GT-AGCTGG--CAAGACCGATTCGAAGCTGCTCACGGACAAGGGAGTTCATATTTGGGAC 53985 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATCTCGGGAGGAGGGCG 34397 | | |||| || || || || || ||| || || || ||| | | | || |||| Sbjct 53986 GGTAACGGATCGCGCGAATTCCTCGACTCTCGTGGCCTCTCCCACCGCCGT--GAAGGCG 54043 Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457 |||||||||| |||||||| ||||| ||| |||||||||| || || | ||| Sbjct 54044 ACTTGGGCCCCGTCTACGGCTTCCAATGGCGACACTTTGGCGCATCCTACACCGACTGCG 54103 Query 34458 AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT--GAA 34515 | || || || | || || || | |||||||| | || ||||||| | | | Sbjct 54104 ACGCAGATTACACAGGGCAAGGCGTAGACCAGCTCGCCCAAGTCATCGACAAGATCCGCA 54163 Query 34516 GCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCT 34575 | ||||| || || | ||| || | |||| |||||||||||||||||| || Sbjct 54164 AC--AACCCCACCGATCGACGCATCTTGCTCAGCGCATGGAACCCGAAGGATCTCGAACT 54221 Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT------------CGCGA 34622 ||||| || ||||| ||||||| | ||| || |||| ||| |||| Sbjct 54222 CATGGCTCTGCCCCCTTGCCACA-TGTTTGCGCAGTTCTTCGTGTCCAACCTCGACGCGT 54280 Query 34623 ATG----GGG--------------AGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACA 34664 | | ||| | || ||||| ||| | || || ||||| | || Sbjct 54281 ACGCCAAGGGCGAAGGTAAGAAACACCTCTCCTGTCAGATGTACCAGCGATCCTGCGATT 54340 Query 34665 TGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTC 34724 |||| | || |||||||||||||| || || || || ||| | || ||||||||||| | Sbjct 54341 TGGGTCTGGGTGTGCCGTTCAACATCGCGAGCTATGCGCTGTTGACCTACATGATCGC-C 54399 Query 34725 ATGTCGTGGGGTTG-GTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTAC 34783 | | | || ||| | || ||| ||||| | |||| |||||||| | ||| Sbjct 54400 AAGGTGACGGATTGCGAGCCGAAAGAGTTGGTGTTGGCCATGGGAGATGCGCACGTGTAC 54459 Query 34784 CTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAG 34843 | | ||| |||||| | | | | |||||| | |||| || || |||||| || Sbjct 54460 AAGGATCACGTCGAGCCGTTGAAGGTGCAGCTGGAGAGAGATCCGTTGCCATTCCCCAAG 54519 Query 34844 CTCA 34847 |||| Sbjct 54520 CTCA 54523 Score = 118 bits (130), Expect = 1e-21 Identities = 429/664 (65%), Gaps = 48/664 (7%) Strand=Plus/Minus Query 6498 TGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGT 6557 |||||| |||||| || || |||| | |||||| | | | | |||||| ||| | Sbjct 54523 TGAGCTTGGGGAATGGCAACGGATCTCTCTCCAGCTGCACCTTCAACGGCTCGACGTGAT 54464 Query 6558 TCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC-CAACCCCACG 6616 | ||| | |||||||| |||| | ||||| ||| || | ||| || | Sbjct 54463 CCTTGTACACGTGCGCATCTCCCATGGCCAACACCAACTCTTTCGGCTCGCAATCCGTCA 54404 Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 | || ||||||||||| || | ||| || || || || |||||||||||||| || | Sbjct 54403 CCTTG-GCGATCATGTAGGTCAACAGCGCATAGCTCGCGATGTTGAACGGCACACCCAGA 54345 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCT--------------CCC--- 6719 |||| || | ||||| || || | ||| ||||| || | ||| Sbjct 54344 CCCAAATCGCAGGATCGCTGGTACATCTGACAGGAGAGGTGTTTCTTACCTTCGCCCTTG 54285 Query 6720 -CATTCGCG------------ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGC 6765 | | |||| ||| |||| || ||| | ||||||| ||||| || || Sbjct 54284 GCGTACGCGTCGAGGTTGGACACGAAGAACTGCGCAAACA-TGTGGCAAGGGGGCAGAGC 54226 Query 6766 CATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTT 6825 ||| || |||||||||||||||||| |||| | || ||| | || || ||||| Sbjct 54225 CATGAGTTCGAGATCCTTCGGGTTCCATGCGCTGAGCAAGATGCGTCGATCGGTGGGGTT 54166 Query 6826 CCGCTTC--AAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCC 6883 | | | | ||||||| || | |||||||| | || || || | || || Sbjct 54165 --GTTGCGGATCTTGTCGATGACTTGGGCGAGCTGGTCTACGCCTTGCCCTGTGTAATCT 54108 Query 6884 GCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCC 6943 || |||| | || || |||||||||| ||| ||||| |||||||| |||||| Sbjct 54107 GCGTCGCAGTCGGTGTAGGATGCGCCAAAGTGTCGCCATTGGAAGCCGTAGACGGGGCCC 54048 Query 6944 AAGTCGCCCTCCTCCCGAGATGG--GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGT 7001 |||||||| || | | | ||| || || || ||| || || || || || |||| Sbjct 54047 AAGTCGCCTTC--ACGGCGGTGGGAGAGGCCACGAGAGTCGAGGAATTCGCGCGATCCGT 53990 Query 7002 GAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGG---TGTTCGTGGCCCCCC 7058 | ||||||| || | || ||| | || |||| ||| | | || || || | Sbjct 53989 TACCGTCCCAAATATGAACTCCCTTGTCCGTGAGCAGCTTCGAATCGGTCTTG--CCAGC 53932 Query 7059 TCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCA 7118 | |||||||| || |||||||| | ||| || || | || ||||||||||| |||| Sbjct 53931 T-ACGAACCAGAGAAGCTCCTCCAGCACTCCGCGGAAGAAGACCCGTTTCGTCGTGAGCA 53873 Query 7119 GCGG 7122 ||| Sbjct 53872 ACGG 53869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448176042248640