Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq27 194 4e-44 seq18 194 4e-44 seq25 136 9e-27 seq3372 123 6e-23 >seq27 Length=198227 Score = 194 bits (214), Expect = 4e-44 Identities = 176/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | ||||||||| |||||||| || || || ||||| || || | |||||| Sbjct 160398 ACGAAGTCGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGT 160339 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || ||||| |||||||| || || ||||| |||||||| |||| || Sbjct 160338 GCGGCCATCCTCGAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGGGGAATGCC 160279 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| ||||||||||| ||| |||||| ||||| Sbjct 160278 CTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGATTCAACTTCGAG 160219 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || | ||||| ||||| | |||||| Sbjct 160218 AGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 160177 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || |||||||| || |||||||| || |||| |||||| | ||||||| Sbjct 160160 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCT 160101 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || || ||||| || || || ||||| || || | || ||||||||| Sbjct 160100 TCCAACTGTTTACCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 160041 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || |||||||| ||| || |||||||| ||||| ||| Sbjct 160040 TGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTC 159981 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 159980 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 159949 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || ||||| | ||| ||| || || ||||| || || | ||| || | ||||| || Sbjct 160613 ACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCCTCG 160554 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 |||||||| || || ||||| || || || |||||||| || | ||||||||||||||| Sbjct 160553 AGCTGCTTACCGGCAAAGATGAGTCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCCTGG 160494 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || || ||||| ||||| ||||| ||| |||||||||||||||||||||||| Sbjct 160493 ATTTTCGCCTTTACGTTGTCGATCGTGTCCGAGGACTCAACCTCGAGAGTGATCGTCTTT 160434 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| ||||| | |||||| Sbjct 160433 CCGGTCAGAGTCTTGACAAAGATCTGCAT 160405 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| | |||| ||| || || ||||| || |||| ||||| | || || Sbjct 160844 AGGACAAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGACAGGGTACGACCGTCC 160785 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || ||||| | || || ||||| || || | || ||||||||| Sbjct 160784 TCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCC 160725 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||| || || || ||||| | |||||| ||| Sbjct 160724 TGGATCTTGGCCTTGACATTGTCAATGGTATCCGACGACTCGACCTCCAAAGTGATGGTC 160665 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| ||||| ||||| | ||||| Sbjct 160664 TTTCCCGTGAGCGTCTTGACAAAGATTTGCAT 160633 >seq18 Length=238221 Score = 194 bits (214), Expect = 4e-44 Identities = 172/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| || ||||| || |||||||| || |||| |||||| | || || Sbjct 226386 AGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCC 226445 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||||||||| || || |||||||| |||| ||| ||||||||| Sbjct 226446 TCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCC 226505 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || |||||||| ||||| ||| Sbjct 226506 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTC 226565 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| ||||| | |||||| || Sbjct 226566 TTACCCGTGAGGGTCTTAACAAAGATCTGCATCTT 226600 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||||||||| ||||| || |||||||| || |||| |||||| | || || Sbjct 147276 AGCACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCC 147217 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || |||||||| || || |||||||| || | || ||||| || Sbjct 147216 TCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGTGGGATGCCCTCCTTATCT 147157 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||||||||| || || ||||| || ||||| ||| Sbjct 147156 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTC 147097 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 147096 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 147065 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| || || || || |||||||| || || | || || | || || Sbjct 147504 AGGACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGGCCGTCC 147445 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || || || || || || | |||||||||||| Sbjct 147444 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGTGGGATGCCTTCCTTGTCC 147385 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| ||| || |||||||| ||||||||| Sbjct 147384 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATCGTC 147325 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| || || | |||||| Sbjct 147324 TTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 147293 >seq25 Length=198755 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||| | || ||||| || |||||||| || || | |||||| Sbjct 152314 ACGAAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGT 152255 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || |||||||| || |||||||| ||||| || ||||| || || | || Sbjct 152254 GCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCC 152195 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || || ||||||||||| || || |||||||| Sbjct 152194 CTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAG 152135 Query 211073 AGTGATCGTCTTTCCCGT 211090 ||||| ||||| || || Sbjct 152134 GGTGATGGTCTTACCTGT 152117 >seq3372 Length=309 Score = 123 bits (136), Expect = 6e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| |||||||| || || ||||| || || || |||||||| || | || ||| Sbjct 13 CCGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCC 72 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||||||||| || || || ||||| ||||| || || ||||| || ||| Sbjct 73 TTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTG 132 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || |||||||| ||||| | |||||| Sbjct 133 ATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 170 Score = 114 bits (126), Expect = 3e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | ||||||||||| || ||||| || |||||||| || |||| || || Sbjct 177 ACGAAGTCGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGT 236 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||| |||||||| || |||||||| || || || |||||||| |||| || Sbjct 237 GCGGCCGTCTTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATACC 296 Query 211013 TTCCTTGTCCTGG 211025 |||||||||||| Sbjct 297 CTCCTTGTCCTGG 309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158923106601380