Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq27 98.7 9e-16 seq18 89.7 4e-13 >seq27 Length=198227 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 39088 GTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCC 39147 |||||||| || || || || || || | || || || |||| || | ||| || || Sbjct 160829 GTGCTCTCCTTCTGAATGTTGTAGTCCGACAGGGTACGACCGTCCTCCAACTGCTTACCA 160770 Query 39148 GCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTG 39207 ||||| || | |||||||||||||| || | | ||| |||||| ||| || ||| Sbjct 160769 GCAAAGATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 160710 Query 39208 AGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTT 39267 | | | | ||||| |||||| || |||| ||||| | |||||||| ||||| Sbjct 160709 ACATTGTCAATGGTATCCGACGACTCGACCTCCAAAGTGATGGTCTTTCCCGTGAGCGTC 160650 Query 39268 TTAACAAAGATTTGCAT 39284 || |||||||||||||| Sbjct 160649 TTGACAAAGATTTGCAT 160633 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||| | || | |||||||| || || || || || |||| ||| || || | Sbjct 160619 CGCAACACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCA 160560 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || || ||||| || || ||||| || || ||||||||||| |||||| | | || || Sbjct 160559 TCCTCGAGCTGCTTACCGGCAAAGATGAGTCGCTGCTGGTCAGGTGGG-ATACCTTCCTT 160501 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||||||| || | ||| | | | ||| || ||||| || || | |||| Sbjct 160500 GTCCTGGATTTTCGCCTTTA-CGTTGTCGATCGTGTCCGAGGACTCAACCTCGAGAGTGA 160442 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | ||||| ||||| || || |||||||| ||||| Sbjct 160441 TCGTCTTTCCGGTCAGAGTCTTGACAAAGATCTGCAT 160405 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| ||| || || || || || || | ||| |||||| | || || Sbjct 160157 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCTTCC 160098 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 | |||||| || ||||| || |||||||||||||||| || | || ||| |||||| Sbjct 160097 AACTGTTTACCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGA 160038 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | || ||| ||||| || || | ||||| | || Sbjct 160037 ATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTT 159979 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || || ||||| ||||| Sbjct 159978 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 159949 >seq18 Length=238221 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || | ||| || || |||| || ||||| || || || || Sbjct 226406 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCGAA 226465 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||| ||||||||||| | ||| | | ||| |||||| ||| || |||| ||| Sbjct 226466 GATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 226524 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || || |||||||| || | ||||| | || ||||| || || |||| Sbjct 226525 TGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTAA 226584 Query 39272 CAAAGATTTGCATCTT 39287 ||||||| |||||||| Sbjct 226585 CAAAGATCTGCATCTT 226600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429464916839156