Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq27 105 5e-18 seq18 86.0 4e-12 >seq27 Length=198227 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || ||||| |||||||||||||| ||||| ||| || Sbjct 160405 ATGCAGATCTTTGTCAAGACTCTGACCGGAAAGACGATCACTCTCGAGGTTGAGTCCTCG 160464 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| ||||| ||||| |||||| | || || || || Sbjct 160465 GACACGATCGACAACGTAAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCTGACCAG 160524 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || |||||||| || || || || || | || ||| | ||| |||||| Sbjct 160525 CAGCGACTCATCTTTGCCGGTAAGCAGCTCGAGGATGGCCGTACTCTTTCCGACTACAAC 160584 Query 23791 ATACAAAAAGAGTCCACATTACA 23813 || || || ||| ||| || || Sbjct 160585 ATTCAGAAGGAGAGCACCTTGCA 160607 >seq18 Length=238221 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || |||||||| ||||| || || ||| || Sbjct 147293 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 147352 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| | || || ||||| Sbjct 147353 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCCGATCAG 147412 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || || |||| || || | || |||||| Sbjct 147413 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACACTCTCTGACTACAAC 147472 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 147473 ATCCAGAAGGAATCGAC 147489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337946110389296