Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq25 111 1e-19 >seq25 Length=198755 Score = 111 bits (122), Expect = 1e-19 Identities = 448/704 (64%), Gaps = 40/704 (6%) Strand=Plus/Minus Query 27048 GAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGG 27107 ||||||||| ||| || ||||| | || | | ||| || || || || |||| Sbjct 54573 GAAATCCTCGTACTTGAAATCGTCGATATCCTTGATCTCCCTCTTGATGCTGAGCTTGGG 54514 Query 27108 AAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGAC 27167 || || || || ||||| ||||| ||||| ||| || ||||||||| ||| || Sbjct 54513 GAATGGCAACGGATCTCTCTCCAGCTGCACCTTCAACGGCTCGACGTGATCCTTGTACAC 54454 Query 27168 GTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 27227 ||| || ||||||| || || |||||| ||| || | || || | || || Sbjct 54453 GTGCGCATCTCCCATGGCCAACACCAACTCTTTCGGCTCGCAATCCGTCACCTTGGCGAT 54394 Query 27228 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 27287 |||||| || | || | ||||| |||||||| || || || || || |||| || | Sbjct 54393 CATGTAGGTCAACAGCGCATAGCTCGCGATGTTGAACGGCACACCCAGACCCAAATCGCA 54334 Query 27288 CGACCTCTGGTAGAGCTGACACGAGAGCTCT------CCATCGC---------------- 27325 || | |||||| | |||||| ||||| | | || |||| Sbjct 54333 GGATCGCTGGTACATCTGACAGGAGAGGTGTTTCTTACCTTCGCCCTTGGCGTACGCGTC 54274 Query 27326 ----TT----ACGTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCC 27374 || ||| | ||||| | | ||| ||||| || || ||||||||||| | Sbjct 54273 GAGGTTGGACACGAAGAACTGCGCAAACATG---TGGCAAGGGGGCAGAGCCATGAGTTC 54217 Query 27375 CAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 | || || |||||||| |||| | | |||||| | || |||||||| | ||| Sbjct 54216 GAGATCCTTCGGGTTCCATGCGCTGAGCAAGATGCGTCGATCGGTGGGGTTGTTGCGGAT 54157 Query 27435 GAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTAC-CCTCATG 27492 ||| | | | || || ||||| || || || ||| | ||| ||| | | || | Sbjct 54156 CTTGTCGATGAC-TTGGGCGAGCTGGTCTACGCCTTGCCCTGTGTAATCTGCGTCGCA-G 54099 Query 27493 TCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCC 27552 || ||||| ||| || || || | ||||||||| ||||| || || |||| ||| || Sbjct 54098 TCGGTGTAGGATGCGCCAAAGTGTCGCCATTGGAAGCCGTAGACGGGGCCCAAGTCGCCT 54039 Query 27553 TCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAG 27612 || | ||| || ||| | ||| | || || | || ||||| ||||||| Sbjct 54038 TCACGGCGGTGGGAGAGGCCACGAGAGTCGAGGAATTCGCGCGATCCGTTACCGTCCCAA 53979 Query 27613 ATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 27672 || | || ||||| || | |||| || || | || || |||||||| || Sbjct 53978 ATATGAACTCCCTTGTCCGTGAGCAGCTTCGAATCGGTCTTGCCAGCTACGAACCAGAGA 53919 Query 27673 AGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 27716 |||||||||| || | | ||||||| || |||||||| Sbjct 53918 AGCTCCTCCAGCACTCCGCGGAAGAAGACCCGTTTCGTCGTGAG 53875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369437794076972