Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq18 127 5e-24 seq27 120 7e-22 >seq18 Length=238221 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || |||||||| ||||| || ||||||||||| || | | || | || || Sbjct 147277 GAGCACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTC 147218 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||| |||||||| | ||||||||| | | ||| || ||||| || Sbjct 147217 CTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGTGGGATGCCCTCCTTATC 147158 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| || ||||| | || | | |||| ||| ||| || ||||| || || || Sbjct 147157 TTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGT 147098 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| ||||||| |||||| Sbjct 147097 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 147065 Score = 111 bits (122), Expect = 4e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || ||||| || ||||| || ||||||||||| || | | || | || || Sbjct 226385 GAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTC 226444 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || |||||||||||||| | ||||||||| | | ||||| ||||| || Sbjct 226445 CTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTC 226504 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| ||| ||| || || || || || || Sbjct 226505 CTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGT 226564 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||||| ||||| || |||| |||||| || Sbjct 226565 CTTACCCGTGAGGGTCTTAACAAAGATCTGCATCTT 226600 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| |||||||| || || || || ||||||||||| || | | || | || || Sbjct 147505 GAGGACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGGCCGTC 147446 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||| ||||| || | |||||| || | | ||| |||||||| || Sbjct 147445 CTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGTGGGATGCCTTCCTTGTC 147386 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| || ||| || || || || || || Sbjct 147385 CTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATCGT 147326 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| ||||||| |||||| Sbjct 147325 CTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 147293 >seq27 Length=198227 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || || || ||||| || ||||||||||| || | | |||| Sbjct 160167 GAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCG 160108 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | ||| ||||| ||||| || | ||||||||| | || ||| || || Sbjct 160107 TCCATCTTCCAACTGTTTACCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTC 160048 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || ||||| | || | | |||| || ||| || || || || Sbjct 160047 CTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGT 159988 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||| ||||||| |||||| Sbjct 159987 GATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 159949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153592959333452