Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq18 156 1e-32 seq27 154 4e-32 seq25 134 3e-26 seq3372 113 1e-19 >seq18 Length=238221 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || ||||||||||||||||| || ||| Sbjct 226594 CAGATCTTTGTTAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGAC 226535 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || ||||| || || |||||||| Sbjct 226534 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCAGCAG 226475 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||| || |||||||| || || | || ||| | || || ||| || Sbjct 226474 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAACATC 226415 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 226414 CAGAAGGAGTCGACCCTTCACCTCGT 226389 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || ||||||||||||||||| || ||| ||| Sbjct 147296 CAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACCCTCGAGGTCGAGTCCTCGGAC 147355 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| ||||| ||||| || || ||||| Sbjct 147356 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCCGATCAGCAG 147415 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| || || | || || | || || ||| || Sbjct 147416 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACACTCTCTGACTACAACATC 147475 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 147476 CAGAAGGAATCGACGCTTCATCTCGT 147501 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 147068 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCGGAC 147127 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||| || || || || ||||| || |||||||| Sbjct 147128 ACCATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAGGGCATCCCACCTGACCAGCAG 147187 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| ||||| || |||||||| || || | || ||| | || || ||| || Sbjct 147188 CGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAACATC 147247 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 147248 CAGAAGGAGTCGACTCTTCACCTCGT 147273 >seq27 Length=198227 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || ||| ||| Sbjct 159952 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGAC 160011 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||||||||| || || ||||| || |||||||| Sbjct 160012 ACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 160071 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| |||||| | ||||||||| | || ||| | || || ||| || Sbjct 160072 CGTCTCATCTTTGCCGGTAAACAGTTGGAAGATGGACGAACCCTTTCGGACTACAACATC 160131 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 160132 CAGAAGGAGTCCACCCTCCA-CTTG 160155 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || ||||| ||||| || ||| ||| ||| Sbjct 160180 CAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAAGTTGAATCCTCGGAC 160239 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || || || || ||||||||| Sbjct 160240 ACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAA 160299 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| ||||| || ||||| ||||| | || ||| |||| || ||| | Sbjct 160300 CGTCTCATTTTCGCAGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAACATT 160359 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || ||||| || || || ||||| ||| |||| Sbjct 160360 CAGAAGGAATCCACTCTCCACCTTGTCTTGCGACT 160394 >seq25 Length=198755 Score = 134 bits (148), Expect = 3e-26 Identities = 141/184 (77%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 ||||| || || |||||||||||||| || || ||||||||||| || ||||| Sbjct 152117 ACAGGTAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATCGACAATGTCAAGGCT 152176 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| || |||||||| || || ||||||||||| || Sbjct 152177 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 152236 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | || ||| |||| || ||| |||| || || || || |||| Sbjct 152237 CAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCTTGCA- 152295 Query 178125 CTTG 178128 |||| Sbjct 152296 CTTG 152299 >seq3372 Length=309 Score = 113 bits (124), Expect = 1e-19 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || || || ||||||||||| |||||||| || ||| Sbjct 167 CAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 108 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 107 ACAATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAG 48 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || || ||||| || || || ||||| ||||| || Sbjct 47 CGTCTCATCTTTGCTGGTAAGCAGCTTGAAGACGG 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203493503713928