Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11- 06] 69 sequences; 19,776,778 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9 423 2e-113 seq18 136 4e-27 seq11 120 3e-22 seq1 118 1e-21 >seq9 Length=823499 Score = 423 bits (468), Expect = 2e-113 Identities = 445/574 (78%), Gaps = 15/574 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||||||||| || |||||||||| ||| ||| | ||||| Sbjct 594438 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATCGACCTT 594379 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||||| | | ||||||||||| ||||| || ||| Sbjct 594378 TCCAAGGATCTCCA-CGACTGGGACAACAAGCTCAACGACAACGAACGCCACTTTATCTC 594320 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 |||||| || ||||| |||||||| |||||| |||||||||||||| || |||||||| Sbjct 594319 GCACGTCCTCGCCTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTCGTCGAGCG 594260 Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 |||| |||| | ||||||| | |||||||| || ||||||||||| || |||||| | Sbjct 594259 TTTCAGCTCCG-AGGTGCAAGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGA 594201 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGG 116930 |||||||| | |||||||| | || ||| |||||||||||| ||| | ||| | | Sbjct 594200 TGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACCTACATTCGCGAGCCCG 594141 Query 116931 AGGAGA---AGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 || || |||||| || ||| |||| ||||||| || || |||||| |||| | Sbjct 594140 AGCAGCGCGAGCTCCTCTT--TGA-CGCCGTCGAGACCATCCCCGTCGTCAAGCAGAAAG 594084 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTG 117046 |||| ||||||||||| |||||| || || || | ||| | |||| |||||| || || Sbjct 594083 CCGACTGGGCGCTGCGATGGATCAGCGACA-AGCGCGCCACTTTCGCCGAGCGTCTCGTC 594025 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 ||||| || ||||| || ||| ||||||| || ||| |||||| |||| || |||||| Sbjct 594024 GCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTC 593965 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| ||||| ||||||||||| || || ||| ||||||||||||||| | ||||| Sbjct 593964 AAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAA 593905 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 |||||||| |||||||||||| | || |||| Sbjct 593904 GGTCTGCACACCGACTTTGCCTGCCTCCTCTTCA 593871 >seq18 Length=577775 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || |||||||| |||| ||||| | Sbjct 283672 AAGATGCAGATCTTCGTTAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTCGAGTCT 283613 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| |||||||||||| | ||| Sbjct 283612 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 283553 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| || || ||||| || |||| | |||||| |||||| Sbjct 283552 CAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTTGAGGACGGCCACACCCTTTCGGACTAC 283493 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | || || || | ||| | ||| || | || || Sbjct 283492 AACATCCAGAAGGAGTCGACCCTCCACTTGGTGCTCCGCCTGCGTGGTGG 283443 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||||||| |||| ||||| || | Sbjct 203837 ATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 203778 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || |||||||| | || || Sbjct 203777 GACACCATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGATCA 203719 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || || || ||||| || |||| ||||| || ||||||||| Sbjct 203718 GCAGCGACTTATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAA 203659 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 203658 CATCCAGAAGGAATCGACTCTCCACCTCGT 203629 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| |||| ||||| || | Sbjct 203609 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCT 203550 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || |||||||| | || || Sbjct 203549 GACACCATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGATCA 203491 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | || ||||| ||||| || |||| || ||||| ||||||||| Sbjct 203490 GCAGCGGCTTATTTTTGCCGGCAAGCAGCTTGAAGACGGCCGTACCCTTTCCGACTACAA 203431 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | ||||| || | || ||||| Sbjct 203430 TATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGCG 203395 >seq11 Length=758843 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || || |||||| |||| || || | || Sbjct 158696 ATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACGATCACCCTCGAGGTGGAGTCTTCC 158637 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || |||| ||||| ||||| ||||| | || || Sbjct 158636 GACACTATCGACAACG-TCAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCTGATCA 158578 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || |||| |||||||| ||| ||||| Sbjct 158577 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTTTCCGATTACAA 158518 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 158517 CATCCAGAAGGAGTCGACCCTCCACCTGGT 158488 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || |||||||||||||| ||||| || |||| ||||| || | Sbjct 158240 ATGCAAATCTTTGTCAAGACGCTCACGGGCAAGACCATTACGCTCGATGTCGAGTCCTCG 158181 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| |||||| || || | ||||| ||||| ||||| | ||||| Sbjct 158180 GATACTATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCA 158122 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || || |||||||| || | ||||| || |||||||| Sbjct 158121 GCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTTTCGGACTACAA 158062 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| ||| |||| || || | || || | ||||| Sbjct 158061 CATTCAGAAGGAGAGCACCTTGCACCTCGTCCTCCGTCTGCGTGGCGG 158014 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| || || || ||||| | || ||||| | | Sbjct 158468 ATGCAGATTTTCGTCAAGACGCTCACAGGAAAGACGATCACACTGGAGGTCGAGTCTTCG 158409 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | || | || || | ||||| ||||| ||||| | |||||| Sbjct 158408 GACACGATCGACAATGTGAAAGCCAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 158349 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||| | ||| || || ||||| || |||| || || ||| |||||||||| Sbjct 158348 CAGCGACTCATTTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTCTCCGACTACAAC 158289 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||||||| |||| |||| || || | || ||| | || || Sbjct 158288 ATTCAGAAGGAGAGCACGTTGCACCTTGTCCTTCGATTGCGCGGAGG 158242 >seq1 Length=2015588 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || || ||||| ||| |||| || || || | |||| | | | | |||||| Sbjct 1818476 ACAGGTAAGACCATTACCCTCGAGGTGGAGTCCTCGGACACCATCAACAATGTCAAGGCC 1818535 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| |||||||||||| | |||||||| || || |||| ||| ||||| Sbjct 1818536 AAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAG 1818595 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| ||||| || ||||||||||||||||||||| | || || || Sbjct 1818596 CAGCTCGAGGACGGCCGCACGCTTTCGGACTACAACATCCAGAAGGAGTCGACTCTCCAC 1818655 Query 40894 CTAGT 40898 || || Sbjct 1818656 CTTGT 1818660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218755623440