Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11- 06] 69 sequences; 19,776,778 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq19 343 1e-89 seq9 197 1e-45 seq11 100 3e-16 seq18 95.1 1e-14 >seq19 Length=568126 Score = 343 bits (380), Expect = 1e-89 Identities = 655/961 (68%), Gaps = 8/961 (1%) Strand=Plus/Minus Query 23017 GACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAAT 23076 || |||||||||||| | ||||| || ||||||||||| || ||||||| | ||| Sbjct 49193 GAGGGCGATCGAGGCCAAGTTGCAGACAGCCACCTCGTCGGGGGCGCTGTACTCGATAAT 49134 Query 23077 TTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATT 23136 ||||| || | ||| ||||| || ||||| | || |||||||||| || || || Sbjct 49133 CTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTT 49074 Query 23137 GCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | |||||||||||| ||| | || |||| |||||| ||||||||||| ||| || Sbjct 49073 AGCGGCATCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCGGTCTGCGACTCGAGGATGGC 49014 Query 23197 TCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTG 23256 ||| | |||| || | || ||| | | ||| || ||||||| | Sbjct 49013 GTACCAGAGCTTCTGGGCCTTGACGGTGCGCTTGGCACGGCCCTCGGCCTCGTAGCGCTC 48954 Query 23257 GTACAACGCG-TCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGAC 23315 ||| | ||| ||||| ||| | ||||| ||||| || |||||||| | | | || | Sbjct 48953 GTAGAG-GCGCTCAAACTCGTCGCCGTAGCAGTCAGCGAGGCCGGGGCACTCGTTGGGGC 48895 Query 23316 ACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATA 23375 ||||||| ||| || | || || | |||| || ||||| || | ||| | Sbjct 48894 ACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCGGGCACCCAGA 48835 Query 23376 GAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCA 23435 | |||||||| || || ||||| ||||||||||| |||||| |||||| | || | Sbjct 48834 GTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGA 48775 Query 23436 AAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || || || ||||||| ||||| ||||| | ||||| |||||| || || || | || Sbjct 48774 GGAACTCAAAGACGTCCGAGTGCCATGGCTCAACGTAAATGGCAAAGGCACCGGGACGCT 48715 Query 23496 TATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGA 23555 | ||||| ||||| |||||||| ||||| ||||||||| | || | ||||| ||||||| Sbjct 48714 TGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGCACGA 48655 Query 23556 GACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAA 23615 ||||||| | ||| || || | ||||| | | || | | ||| | Sbjct 48654 TACCGTTGCTGACACCGTTGGTACCGGCAATGTAGGAACCGGTGCCGCGGATGCAGTGGA 48595 Query 23616 CGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGT 23675 || || || || || ||| | | || || ||||| || || || || ||||||| Sbjct 48594 TGTTGAGGCCGATACCACCGGCGGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGT 48535 Query 23676 AGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTT 23735 ||||||| ||||| ||| || || | | ||| | ||| ||||| || | || | | Sbjct 48534 AGATGCCATCGATCGAGTCGTCCTTCATGGTGACGAGGAAGCACGACGAGAGCTGAGGGT 48475 Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795 || ||| | || ||| || || ||| |||||| |||||||| | |||||| | Sbjct 48474 GCGGGGTACCTGCGTTGAAGAGGGTGGGGGAGGCGTGTGTAAAGTACTTTTGCGACATGA 48415 Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855 | ||||| || || |||||| || ||||||| ||||| ||||||| |||||| |||| Sbjct 48414 GGTTGTAGGTCTCAATGGCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACACGCA 48355 Query 23856 TCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAAC 23912 | | ||||| || || | || ||||| | |||||| || || || || || | Sbjct 48354 TGAGCATGTGCTGGGGACGCTCTGCGACCTT---GCCGTTGATGCGGAGGAGGTAGGAGC 48298 Query 23913 GTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCG 23972 | | | ||| || || || || ||| |||| ||||| || |||| | ||||||| Sbjct 48297 GCTCGAGCGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCG 48238 Query 23973 A 23973 | Sbjct 48237 A 48237 >seq9 Length=823499 Score = 197 bits (218), Expect = 1e-45 Identities = 391/570 (69%), Gaps = 23/570 (4%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||||||||| || || || || ||||||| |||||| | ||||| Sbjct 594438 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATCGACCTT 594379 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| ||| ||||| | ||||| || || | | ||||| Sbjct 594378 TCCAAGGATCTCCACGACTGGGACAACAAGCTCAACGACAACGAACGCCACTTTATCTCG 594319 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || |||||||| ||||| ||||| || |||||||| | ||||| | Sbjct 594318 CACGTCCTCGCCTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTCGTCGAGCG- 594260 Query 57747 TTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| || ||||||| | ||||| | ||||| ||||| || || | | Sbjct 594259 -TTTCAGCTCCGAGGTGCAAGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGA 594201 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | || ||| | || || || | || ||||| |||||||| || ||| | || || Sbjct 594200 TGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACCTACATTCGCGAGCCCG 594141 Query 57865 ACGAGAAACGTAGA--CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAG-- 57920 | || || || || || |||| |||| || || |||| ||| |||| || Sbjct 594140 AGCAGCG-CG-AGCTCCTCTTTGACGCCGTCGAGACCATCCCCG---TCGTCAAGCAGAA 594086 Query 57921 -GCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG---GCCACGTTCGCCGAGAGGCT 57976 || || ||| | | |||||| | ||| || | ||||| ||||||||| | || Sbjct 594085 AGCCGACTGGGCGCTGCGATGGATCA---GCGACAAGCGCGCCACTTTCGCCGAGCGTCT 594029 Query 57977 AATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTG 58036 |||| || |||||||| ||||| || ||||| || ||| ||| || | || || || Sbjct 594028 CGTCGCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTG 593969 Query 58037 GATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGA 58096 | | ||||| ||||| || |||||||| || || || ||||||| | || |||||||| Sbjct 593968 GCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCGCGCGA 593909 Query 58097 CGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 ||| ||||| || || || ||||| ||||| Sbjct 593908 CGAAGGTCTGCACACCGACTTTGCCTGCCT 593879 >seq11 Length=758843 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||||||||| || || ||||||||| |||| || || | || Sbjct 158697 CATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACGATCACCCTCGAGGTGGAGTCTTC 158638 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| | ||||| | || |||||||| || | || || || || Sbjct 158637 CGACACTATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCTGATCA 158578 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || || ||||| ||| | || ||| || | |||||| || Sbjct 158577 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTTTCCGATTACAA 158518 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || ||||| || Sbjct 158517 CATCCAGAAGGAGTCGACCCTCCACCTGGTCCT 158485 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || ||||| || |||||||| | || || || | || Sbjct 158468 ATGCAGATTTTCGTCAAGACGCTCACAGGAAAGACGATCACACTGGAGGTCGAGTCTTCG 158409 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | || ||||||||| || | ||||| |||||| Sbjct 158408 GACACGATCGACAATGTGAAAGCCAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 158349 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || |||||||| || ||| | || ||| ||| | ||| || ||| Sbjct 158348 CAGCGACTCATTTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTCTCCGACTACAAC 158289 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || | || || || ||| || || | || |||| Sbjct 158288 ATTCAGAAGGAGAGCACGTTGCACCTTGTCCTTCGATTGCGCGGAGGTA 158240 >seq18 Length=577775 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || ||||| || |||||| |||| || || | || Sbjct 203837 ATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 203778 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||||||| | || ||||| ||| Sbjct 203777 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGATCAG 203718 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || || || ||| | || ||| ||| | ||| || ||| Sbjct 203717 CAGCGACTTATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 203658 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||||||||| || || || || Sbjct 203657 ATCCAGAAGGAATCGACTCTCCACCTCGTCCT 203626 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| ||||| || ||||| |||| || || | || Sbjct 203609 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCT 203550 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||||||| | || ||||| ||| Sbjct 203549 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGATCAG 203490 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||| || || || || ||||| ||| | |||||| Sbjct 203489 CAGCGGCTTATTTTTGCCGGCAAGCAGCTTGAAGAC 203454 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || || || || ||||| |||| || || | Sbjct 283672 AAGATGCAGATCTTCGTTAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTCGAGTCT 283613 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| ||| | || |||||| Sbjct 283612 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 283553 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || || |||||||| || ||| | || ||| Sbjct 283552 CAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTTGAGGAC 283514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766015526480