Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11- 06] 69 sequences; 19,776,778 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq19 111 2e-19 >seq19 Length=568126 Score = 111 bits (122), Expect = 2e-19 Identities = 435/679 (64%), Gaps = 4/679 (1%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | |||||| || |||| | || || | ||||| |||||||| || | | Sbjct 48898 GGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCGGGCACC 48839 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || || || || || |||| | | ||||| || || ||||| || Sbjct 48838 CAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 48779 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 ||||||||| | | | || || ||||| || || | ||| ||||| | | || || Sbjct 48778 TCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAACGTAAATGGCAAAGGCACCGGGA 48719 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || ||||| || | ||| | |||||||| || | || | | ||| || Sbjct 48718 CGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGC 48659 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | |||||||| | ||| |||||||||| || ||| || || | || || | Sbjct 48658 ACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAGGAACCGGTGCCGCGGATGC-A 48600 Query 63534 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CG 63591 | || | || || || || || || | || ||||| | || || ||| || | || Sbjct 48599 GTGGATGTTGAGGCCGATACCACCGGCGGTCTTGGAGATCATGGCACA-CGTCTTGAGCG 48541 Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651 |||| |||||||| || || || || ||||| | | || || || || | | Sbjct 48540 TGTCGTAGATGCCATCGATCGAGTCGTCCTTCATGGTGACGAGGAAGCACGACGAGAGCT 48481 Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711 | | | | || || || || || | ||| || || ||||| ||||| | |||| | Sbjct 48480 GAGGGTGCGGGGTACCTGCGTTGAAGAGGGTGGGGGAGGCGTGTGTAAAGTACTTTTGCG 48421 Query 63712 AAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGA 63771 | | || ||||| |||||||| || || || ||| || || || || |||| Sbjct 48420 ACATGAGGTTGTAGGTCTCAATGGCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGA 48361 Query 63772 CACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGG 63831 ||||||| | ||||||||| || | || | | ||| ||| || | | ||||| Sbjct 48360 CACGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGGAGGTAGG 48301 Query 63832 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 63891 | || | || || || || || ||||||| ||||| || ||||| || || Sbjct 48300 AGCGCTCGAGCGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGG 48241 Query 63892 CCGAATTGAGCTTATCCTT 63910 |||| | ||||| ||||| Sbjct 48240 CCGAGTCGAGCTGGTCCTT 48222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817056782320