Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11- 06] 69 sequences; 19,776,778 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq9 95.1 9e-15 seq12 91.5 1e-13 >seq9 Length=823499 Score = 95.1 bits (104), Expect = 9e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 |||||| | |||||||| || ||||||||| || | || || || || || || |||| Sbjct 594033 CGTCTCGTCGCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCCTTCGCCTCCATC 593974 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||||| ||||| || |||||||| || | | || ||||||||| | || Sbjct 593973 TTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCG 593914 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 || ||||||||||| ||| |||||||| || Sbjct 593913 CGCGACGAAGGTCTGCACACCGACTTTGCCTG 593882 >seq12 Length=665503 Score = 91.5 bits (100), Expect = 1e-13 Identities = 120/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 33554 TGCGCAAGATACGCATACCAGAGATGGGCGACAAGTTTGCATCG-TTCACGGCCCAGAAG 33612 ||||||| | || | || ||| ||||||||||||||| ||| ||||| |||||| Sbjct 67102 TGCGCAACACGCGTGTGCCGCAGACGGGCGACAAGTTTGCCTCGCGCCACGG-TCAGAAG 67160 Query 33613 GGCACGTGCGGCATGATGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTC 33672 || ||| ||| || | |||| ||| ||||||||||||| |||| || || | Sbjct 67161 GGTACGATCGGTATCACGTACAGGCAGGAGGACATGCCGTTCTCGGCGGAAGGAATTACG 67220 Query 33673 CCGGACCTAGTCATCAACCCGCATGCGTTCCCCTCGCGCATGAC 33716 |||||| | ||||||||||||| || | || ||||| ||||| Sbjct 67221 CCGGACATTATCATCAACCCGCACGCCATTCCGTCGCGAATGAC 67264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356233300429807