Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11- 06] 69 sequences; 19,776,778 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq18 100 3e-16 seq9 82.4 8e-11 >seq18 Length=577775 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||||||| ||||| | ||| ||||| || || || || || ||| Sbjct 203383 CCTCCACGGAGACGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGAA 203442 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| ||||| || || ||| | || || || ||||||||||| || Sbjct 203443 AGGGTACGGCCGTCTTCAAGCTGCTTGCCGGCAAAAATAAGCCGCTGCTGATCGGGTGGG 203502 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || || | | || | ||||| | || ||| ||| Sbjct 203503 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACC 203562 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||||||||||| || || || || || |||||| Sbjct 203563 TCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCATA 203610 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || || ||||| || ||| | |||| ||| |||||||| || || Sbjct 203641 GTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCT 203700 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || || ||||||||||| || |||||||| ||||| ||| || || Sbjct 203701 GCAAAGATAAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 203760 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||| ||||| | ||| | ||||||||||| | || Sbjct 203761 ACGTTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTC 203820 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 203821 TTAACAAAGATCTGCAT 203837 >seq9 Length=823499 Score = 82.4 bits (90), Expect = 8e-11 Identities = 143/204 (70%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 52573 GATTGGGCATTGAAATGGATCGAAAACGACAAA---GCCACTTTTGCCGAACGTCTGGTC 52629 || ||||| || ||||||| | |||||| |||||||| ||||| ||||| ||| Sbjct 594081 GACTGGGCGCTGCGATGGATC---AGCGACAAGCGCGCCACTTTCGCCGAGCGTCTCGTC 594025 Query 52630 GCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATC 52689 || ||||| || ||||| | || || || || || || | || || | || Sbjct 594024 GCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTC 593965 Query 52690 AA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGA 52748 || || | || | | |||||||| ||||| || ||||||| | || ||||||||||| Sbjct 593964 AAGAAGCGCGGTC-TCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGA 593906 Query 52749 AGGAATGCACACAGATTTTGCGTG 52772 ||| ||||||| || ||||| || Sbjct 593905 AGGTCTGCACACCGACTTTGCCTG 593882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063572144800