Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11-
06] 69 sequences; 19,776,778 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq18 100 3e-16
seq9 82.4 8e-11
>seq18
Length=577775
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||||||||| ||||| | ||| ||||| || || || || || |||
Sbjct 203383 CCTCCACGGAGACGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGAA 203442
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | |||||| ||||| || || ||| | || || || ||||||||||| ||
Sbjct 203443 AGGGTACGGCCGTCTTCAAGCTGCTTGCCGGCAAAAATAAGCCGCTGCTGATCGGGTGGG 203502
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|||||||| ||||| ||| || || | | || | ||||| | || ||| |||
Sbjct 203503 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACC 203562
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| | || | ||||||||||||| || || || || || ||||||
Sbjct 203563 TCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCATA 203610
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| || || || || ||||| || ||| | |||| ||| |||||||| || ||
Sbjct 203641 GTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCT 203700
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || || ||||||||||| || |||||||| ||||| ||| || ||
Sbjct 203701 GCAAAGATAAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 203760
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| | || ||| ||||| | ||| | ||||||||||| | ||
Sbjct 203761 ACGTTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTC 203820
Query 139748 TTTACGAATATTTGCAT 139764
|| || || || |||||
Sbjct 203821 TTAACAAAGATCTGCAT 203837
>seq9
Length=823499
Score = 82.4 bits (90), Expect = 8e-11
Identities = 143/204 (70%), Gaps = 8/204 (4%)
Strand=Plus/Minus
Query 52573 GATTGGGCATTGAAATGGATCGAAAACGACAAA---GCCACTTTTGCCGAACGTCTGGTC 52629
|| ||||| || ||||||| | |||||| |||||||| ||||| ||||| |||
Sbjct 594081 GACTGGGCGCTGCGATGGATC---AGCGACAAGCGCGCCACTTTCGCCGAGCGTCTCGTC 594025
Query 52630 GCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATC 52689
|| ||||| || ||||| | || || || || || || | || || | ||
Sbjct 594024 GCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTC 593965
Query 52690 AA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGA 52748
|| || | || | | |||||||| ||||| || ||||||| | || |||||||||||
Sbjct 593964 AAGAAGCGCGGTC-TCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGA 593906
Query 52749 AGGAATGCACACAGATTTTGCGTG 52772
||| ||||||| || ||||| ||
Sbjct 593905 AGGTCTGCACACCGACTTTGCCTG 593882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496063572144800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |