Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11- 06] 69 sequences; 19,776,778 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq19 105 9e-18 >seq19 Length=568126 Score = 105 bits (116), Expect = 9e-18 Identities = 443/695 (64%), Gaps = 6/695 (1%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || || ||||| | ||||| || || | | | || | ||||| Sbjct 48913 CCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATG 48854 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| || | ||| || || || || |||| || | |||||| || || Sbjct 48853 AAGAGATCGGGCACCCAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTGCCG 48794 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| || ||||||||| | | | || || ||||| || || | ||| ||| Sbjct 48793 TGGTTCTTGCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAACGTAAATG 48734 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || ||||| || | ||| | |||||||| || | Sbjct 48733 GCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAG 48674 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| || | ||||| ||| |||| ||||| |||| || ||| || Sbjct 48673 ACGCGGAGCATGGGCACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAGGAACCG 48614 Query 72274 CTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 || | || || | || |||| | || || || || || | || ||||| | | Sbjct 48613 GTGCCGCGGATGCAGTGGATGTTGA--GGCCGATACCACCGGCGGTCTTGGAGATCATGG 48556 Query 72332 CGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 | || ||| || | ||| || |||||||| || || || ||| ||||| | | || Sbjct 48555 CACA-CGTCTTGAGCGTGTCGTAGATGCCATCGATCGAGTCGTCCTTCATGGTGACGAGG 48497 Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 || || || | || | | || || || || || | ||| || || ||||| Sbjct 48496 AAGCACGACGAGAGCTGAGGGTGCGGGGTACCTGCGTTGAAGAGGGTGGGGGAGGCGTGT 48437 Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 72510 ||||| | |||| |||| || ||||| |||||||| || || || ||| Sbjct 48436 GTAAAGTACTTTTGCGACATGAGGTTGTAGGTCTCAATGGCGCTCTCGATGTCCTGGCCG 48377 Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 || || || || ||||||||||| | ||| ||||| || | || ||| |||| || Sbjct 48376 TGGATACCGACGGCGACACGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTG 48317 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 72630 || | | |||||| || | || || || || || ||||||| ||||| Sbjct 48316 ATGCGGAGGAGGTAGGAGCGCTCGAGCGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCG 48257 Query 72631 CGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 || ||||| || || |||| | ||| | ||||| Sbjct 48256 CGCTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 48222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138621142440