Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11-
06] 69 sequences; 19,776,778 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq19 105 9e-18
>seq19
Length=568126
Score = 105 bits (116), Expect = 9e-18
Identities = 443/695 (64%), Gaps = 6/695 (1%)
Strand=Plus/Minus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
|| || || || || || ||||| | ||||| || || | | | || | |||||
Sbjct 48913 CCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATG 48854
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
|||||||| || | ||| || || || || |||| || | |||||| || ||
Sbjct 48853 AAGAGATCGGGCACCCAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTGCCG 48794
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
||||| || ||||||||| | | | || || ||||| || || | ||| |||
Sbjct 48793 TGGTTCTTGCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAACGTAAATG 48734
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | || || || ||||| || ||||| || | ||| | |||||||| || |
Sbjct 48733 GCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAG 48674
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|| | | ||| || | ||||| ||| |||| ||||| |||| || ||| ||
Sbjct 48673 ACGCGGAGCATGGGCACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAGGAACCG 48614
Query 72274 CTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331
|| | || || | || |||| | || || || || || | || ||||| | |
Sbjct 48613 GTGCCGCGGATGCAGTGGATGTTGA--GGCCGATACCACCGGCGGTCTTGGAGATCATGG 48556
Query 72332 CGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390
| || ||| || | ||| || |||||||| || || || ||| ||||| | | ||
Sbjct 48555 CACA-CGTCTTGAGCGTGTCGTAGATGCCATCGATCGAGTCGTCCTTCATGGTGACGAGG 48497
Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450
|| || || | || | | || || || || || | ||| || || |||||
Sbjct 48496 AAGCACGACGAGAGCTGAGGGTGCGGGGTACCTGCGTTGAAGAGGGTGGGGGAGGCGTGT 48437
Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 72510
||||| | |||| |||| || ||||| |||||||| || || || |||
Sbjct 48436 GTAAAGTACTTTTGCGACATGAGGTTGTAGGTCTCAATGGCGCTCTCGATGTCCTGGCCG 48377
Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570
|| || || || ||||||||||| | ||| ||||| || | || ||| |||| ||
Sbjct 48376 TGGATACCGACGGCGACACGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTG 48317
Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 72630
|| | | |||||| || | || || || || || ||||||| |||||
Sbjct 48316 ATGCGGAGGAGGTAGGAGCGCTCGAGCGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCG 48257
Query 72631 CGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665
|| ||||| || || |||| | ||| | |||||
Sbjct 48256 CGCTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 48222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138621142440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |