Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11- 06] 69 sequences; 19,776,778 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9 235 8e-57 seq19 190 3e-43 seq1 91.5 2e-13 seq3 89.7 8e-13 >seq9 Length=823499 Score = 235 bits (260), Expect = 8e-57 Identities = 410/577 (71%), Gaps = 26/577 (5%) Strand=Plus/Minus Query 125011 ATCATGACA--TTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGA 125068 ||||| ||| | ||| |||||||||||||||| |||| ||||| ||||| | |||||| Sbjct 594448 ATCATCACAGATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGA 594389 Query 125069 GGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAG 125127 | |||| || |||||||| || |||| ||||| | | | | || ||| || || Sbjct 594388 GATCGACCTTTCCAAGGATCTCCACGACTGGGACAACAAGCTCAACGACAAC-GAACGCC 594330 Query 125128 AGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC 125187 | ||||| |||||| | | |||||||| |||| ||||| || ||||||||||| || | Sbjct 594329 ACTTTATCTCGCACGTCCTCGCCTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACC 594270 Query 125188 T-GTTGACACGATTCT-CTCAAGAGTTGACCATTC-CAGAGGTGTCGT-GCTTTTACGGA 125243 | || || || ||| ||| ||| || | | | | |||| |||| |||| ||||| Sbjct 594269 TCGTCGAG-CGTTTCAGCTCC-GAGGTG-CAAGCCGCCGAGGC-TCGTTGCTTCTACGGT 594214 Query 125244 TTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTAC 125303 ||||| |||||||| |||||| | |||||||| | ||||| || || |||| ||| Sbjct 594213 TTCCAGATCATGATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACCTAC 594154 Query 125304 ATTCGCGATCC---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTC 125359 |||||||| || ||| || | | | |||||| |||| |||| || | || ||| Sbjct 594153 ATTCGCGAGCCCGAGCAGCGCGAGCTC---CTCTTTGACGCCGTCGAGACCATCCCCGTC 594097 Query 125360 TATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT---CTTCGTA 125416 | | | |||| | | |||| | | || |||||| ||||||| | | | Sbjct 594096 GTCAAGCAGAAAGCCG-ACTGGGCGCTGCGATGGATCAG---CGACAAGCGCGCCACTTT 594041 Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGC 125476 |||||| | || || || || |||||||| || ||||||||||| || || || || Sbjct 594040 CGCCGAGCGTCTCGTCGCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCCTTCGC 593981 Query 125477 GGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536 ||||||| ||||||||||||||||| ||||||||||| || || | |||||| | Sbjct 593980 CTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCT 593921 Query 125537 TATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 || || || ||||| || || ||| ||||||||| Sbjct 593920 CATCTCGCGCGACGAAGGTCTGCACACCGACTTTGCC 593884 >seq19 Length=568126 Score = 190 bits (210), Expect = 3e-43 Identities = 327/472 (69%), Gaps = 2/472 (0%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| | ||| | || || |||||| ||||| Sbjct 48702 CAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATTTACGTTGAGCCATGGCACTCGGAC 48761 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || |||| | ||||| ||| ||| || |||| || ||| | || Sbjct 48762 GTCTTTGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTGCGTGCCCGAGAG 48821 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || |||||||||||||| ||| | ||||||||| | ||| | | ||| || Sbjct 48822 CTCTTCTACGCACTCTGGGTGCCCGATCTCTTCATGAAGAGGGTCGAGCAGAACGGCGAC 48881 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || ||||||||| || || ||||| || | || |||| ||||| |||||| Sbjct 48882 TGGTCGCTCATGTGCCCCAACGAGTGCCCCGGCCTCGCTGACTGCTACGGCGACGAGTTT 48941 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGA 97175 ||| | ||| | ||||||| |||||||| | | | ||| | || | | Sbjct 48942 GAGCGCCTCTACGAGCGCTACGAGGCCGAGGGCCGTGCCAAGCGCACCGTCAAGGC-CCA 49000 Query 97176 GAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTA 97234 ||| || ||| | |||||| | | | ||| ||||| || | || | ||| ||||| Sbjct 49001 GAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCGGCAACCCCTTCATCCTCTA 49060 Query 97235 CAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAA 97294 ||||||| ||| || ||||| |||||||| || | |||||||||||| ||||||| Sbjct 49061 CAAGGATGCCGCTAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAAGTGCTCCAA 49120 Query 97295 TCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 ||||||| || ||| | |||||| | | || |||||| ||| || ||| Sbjct 49121 CTTGTGCACCGAGATTATCGAGTACAGCGCCCCCGACGAGGTGGCTGTCTGC 49172 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGAC-CAAGACGCTGATCGATATGGCTGCCGACAGA 98096 |||||||||| |||||||||| || | | ||| | | ||||| ||||| |||||| | Sbjct 49879 TCTACAAGACCGTCTGGGAGA-TCAGCCAGAAGGCCATCATCGACATGGCCGCCGACCGT 49937 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| | ||| |||| || ||| |||| | || | | | ||| |||| | Sbjct 49938 GGTGCTTTCATCTGCCAGTCGCAGTCGCTCAACATTCACCTCTCGGCGCCTACCTTTGGC 49997 Query 98157 CGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216 | | || ||||| ||||| |||| ||||| ||||| |||||||| || | ||||| Sbjct 49998 CAGCTCACCTCGATGCACTTCTACGGCTGGAAGAAGGGTCTCAAGACCGGTACCTACTAC 50057 Query 98217 CTGAGAACAAAGTCGGCCACCAATGCCAT 98245 ||| | || ||| | ||| |||| ||||| Sbjct 50058 CTGCGTACCAAGCCTGCCTCCAACGCCAT 50086 >seq1 Length=2015588 Score = 91.5 bits (100), Expect = 2e-13 Identities = 265/396 (67%), Gaps = 14/396 (4%) Strand=Plus/Plus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955 |||||| | || |||||| ||||||| || ||||| ||||||||||| | ||| | Sbjct 1719534 CCTCTGCTCACCACCAAGCGTGTCTTTTTCCGTGGCGTGCTCGAGGAGCTCCTCTGGTTT 1719593 Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGA-AAGGGTGTACACATTTGGAGCGG 70014 || | || |||| || | ||| ||| | | || ||||| |||||||| ||| ||| Sbjct 1719594 GTTGCTGGCAAGACCGATTCGAAACTGCTCA-CAGATAAGGGCGTACACATCTGGGACGG 1719652 Query 70015 CAACAGTAGTCGAAGCGTTTTGGATTCGCTC-GGCT---TCACCGACAGACAAGAGGGCG 70070 |||| | || | | || |||| | |||| |||||| ||| ||| |||| Sbjct 1719653 CAACGGATCGCGTGAATTCCTCGACTCGCGCGGGCTGTCTCACCG-CAG---AGAAGGCG 1719708 Query 70071 ATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCG 70130 | |||| || || ||||| ||||| ||| | |||| ||| | |||| ||| |||| Sbjct 1719709 ACTTGGGCCCCGTCTACGGTTTCCAATGGCGACACTTTGGCGCAGAGTACACAGATTGCG 1719768 Query 70131 AGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACTCTCAAG 70189 | || |||| | ||||| || || |||||| | || | | | || |||| ||||| Sbjct 1719769 ATACCAACTACACCGGTCAAGGCGTCGATCAACTCGCTCA-AGTGATCGACAAGATCAAG 1719827 Query 70190 ACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAA 70249 | ||| || || || | | ||| | | || | ||||| || || | | | Sbjct 1719828 AACAACCCTACCGACCGTCGCATCCTGCTCAGCGCCTGGAACCCCAAGGACCTCGAACTG 1719887 Query 70250 ATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTT 70284 ||||| || || ||||| ||| ||||| || ||||| Sbjct 1719888 ATGGCGCTGCCGCCGTGCCACATGTTT-GCGCAGTT 1719922 >seq3 Length=1272512 Score = 89.7 bits (98), Expect = 8e-13 Identities = 173/254 (68%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 ||||| || ||||| || ||| |||||| |||| |||||||| | | || || | Sbjct 431766 CCGTGGGTAAGGTGACCACCGGAGGGCAGGCCGAGACCCATGATGCGGTCCTGGGGCTGG 431707 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || | ||| | |||||||||||| | ||||| ||||| || || || || Sbjct 431706 AGGAGCGCGGTGAAGGTGGCAAAGTTGGCGGTGGAGCCAGAGTAAGGCTGGACGTTGACG 431647 Query 127567 CCCCATTC---GGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGT 127623 ||||| | || ||| | ||||| || ||||| |||||||| |||| Sbjct 431646 CCCCACACCTTGGGGTCG---AGGTTGAAGGCCTTGAGAGCACGCTGCTGGCAGAGCACC 431590 Query 127624 TCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAG 127683 |||| | || || ||||||||||||| ||||| || ||||| |||||| ||| Sbjct 431589 TCGAGCTGGTCAATGTACTCGTTACCACCGTAGTAGCGGGCGCCGGGGAGACCCTCAGAG 431530 Query 127684 TACTTGTTGATGAG 127697 ||||||||| |||| Sbjct 431529 TACTTGTTGGTGAG 431516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058560836440