Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11-
06] 69 sequences; 19,776,778 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq9 235 8e-57
seq19 190 3e-43
seq1 91.5 2e-13
seq3 89.7 8e-13
>seq9
Length=823499
Score = 235 bits (260), Expect = 8e-57
Identities = 410/577 (71%), Gaps = 26/577 (5%)
Strand=Plus/Minus
Query 125011 ATCATGACA--TTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGA 125068
||||| ||| | ||| |||||||||||||||| |||| ||||| ||||| | ||||||
Sbjct 594448 ATCATCACAGATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGA 594389
Query 125069 GGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAG 125127
| |||| || |||||||| || |||| ||||| | | | | || ||| || ||
Sbjct 594388 GATCGACCTTTCCAAGGATCTCCACGACTGGGACAACAAGCTCAACGACAAC-GAACGCC 594330
Query 125128 AGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC 125187
| ||||| |||||| | | |||||||| |||| ||||| || ||||||||||| || |
Sbjct 594329 ACTTTATCTCGCACGTCCTCGCCTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACC 594270
Query 125188 T-GTTGACACGATTCT-CTCAAGAGTTGACCATTC-CAGAGGTGTCGT-GCTTTTACGGA 125243
| || || || ||| ||| ||| || | | | | |||| |||| |||| |||||
Sbjct 594269 TCGTCGAG-CGTTTCAGCTCC-GAGGTG-CAAGCCGCCGAGGC-TCGTTGCTTCTACGGT 594214
Query 125244 TTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTAC 125303
||||| |||||||| |||||| | |||||||| | ||||| || || |||| |||
Sbjct 594213 TTCCAGATCATGATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACCTAC 594154
Query 125304 ATTCGCGATCC---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTC 125359
|||||||| || ||| || | | | |||||| |||| |||| || | || |||
Sbjct 594153 ATTCGCGAGCCCGAGCAGCGCGAGCTC---CTCTTTGACGCCGTCGAGACCATCCCCGTC 594097
Query 125360 TATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT---CTTCGTA 125416
| | | |||| | | |||| | | || |||||| ||||||| | | |
Sbjct 594096 GTCAAGCAGAAAGCCG-ACTGGGCGCTGCGATGGATCAG---CGACAAGCGCGCCACTTT 594041
Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGC 125476
|||||| | || || || || |||||||| || ||||||||||| || || || ||
Sbjct 594040 CGCCGAGCGTCTCGTCGCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCCTTCGC 593981
Query 125477 GGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536
||||||| ||||||||||||||||| ||||||||||| || || | |||||| |
Sbjct 593980 CTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCT 593921
Query 125537 TATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573
|| || || ||||| || || ||| |||||||||
Sbjct 593920 CATCTCGCGCGACGAAGGTCTGCACACCGACTTTGCC 593884
>seq19
Length=568126
Score = 190 bits (210), Expect = 3e-43
Identities = 327/472 (69%), Gaps = 2/472 (0%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || || | ||| | ||| | || || |||||| |||||
Sbjct 48702 CAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATTTACGTTGAGCCATGGCACTCGGAC 48761
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| ||||| || |||| | ||||| ||| ||| || |||| || ||| | ||
Sbjct 48762 GTCTTTGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTGCGTGCCCGAGAG 48821
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || |||||||||||||| ||| | ||||||||| | ||| | | ||| ||
Sbjct 48822 CTCTTCTACGCACTCTGGGTGCCCGATCTCTTCATGAAGAGGGTCGAGCAGAACGGCGAC 48881
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
||| || ||||||||| || || ||||| || | || |||| ||||| ||||||
Sbjct 48882 TGGTCGCTCATGTGCCCCAACGAGTGCCCCGGCCTCGCTGACTGCTACGGCGACGAGTTT 48941
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGA 97175
||| | ||| | ||||||| |||||||| | | | ||| | || | |
Sbjct 48942 GAGCGCCTCTACGAGCGCTACGAGGCCGAGGGCCGTGCCAAGCGCACCGTCAAGGC-CCA 49000
Query 97176 GAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTA 97234
||| || ||| | |||||| | | | ||| ||||| || | || | ||| |||||
Sbjct 49001 GAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCGGCAACCCCTTCATCCTCTA 49060
Query 97235 CAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAA 97294
||||||| ||| || ||||| |||||||| || | |||||||||||| |||||||
Sbjct 49061 CAAGGATGCCGCTAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAAGTGCTCCAA 49120
Query 97295 TCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346
||||||| || ||| | |||||| | | || |||||| ||| || |||
Sbjct 49121 CTTGTGCACCGAGATTATCGAGTACAGCGCCCCCGACGAGGTGGCTGTCTGC 49172
Score = 91.5 bits (100), Expect = 2e-13
Identities = 147/209 (70%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 98038 TCTACAAGACTGTCTGGGAGATTCCGAC-CAAGACGCTGATCGATATGGCTGCCGACAGA 98096
|||||||||| |||||||||| || | | ||| | | ||||| ||||| |||||| |
Sbjct 49879 TCTACAAGACCGTCTGGGAGA-TCAGCCAGAAGGCCATCATCGACATGGCCGCCGACCGT 49937
Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156
|||| | ||| |||| || ||| |||| | || | | | ||| |||| |
Sbjct 49938 GGTGCTTTCATCTGCCAGTCGCAGTCGCTCAACATTCACCTCTCGGCGCCTACCTTTGGC 49997
Query 98157 CGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216
| | || ||||| ||||| |||| ||||| ||||| |||||||| || | |||||
Sbjct 49998 CAGCTCACCTCGATGCACTTCTACGGCTGGAAGAAGGGTCTCAAGACCGGTACCTACTAC 50057
Query 98217 CTGAGAACAAAGTCGGCCACCAATGCCAT 98245
||| | || ||| | ||| |||| |||||
Sbjct 50058 CTGCGTACCAAGCCTGCCTCCAACGCCAT 50086
>seq1
Length=2015588
Score = 91.5 bits (100), Expect = 2e-13
Identities = 265/396 (67%), Gaps = 14/396 (4%)
Strand=Plus/Plus
Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955
|||||| | || |||||| ||||||| || ||||| ||||||||||| | ||| |
Sbjct 1719534 CCTCTGCTCACCACCAAGCGTGTCTTTTTCCGTGGCGTGCTCGAGGAGCTCCTCTGGTTT 1719593
Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGA-AAGGGTGTACACATTTGGAGCGG 70014
|| | || |||| || | ||| ||| | | || ||||| |||||||| ||| |||
Sbjct 1719594 GTTGCTGGCAAGACCGATTCGAAACTGCTCA-CAGATAAGGGCGTACACATCTGGGACGG 1719652
Query 70015 CAACAGTAGTCGAAGCGTTTTGGATTCGCTC-GGCT---TCACCGACAGACAAGAGGGCG 70070
|||| | || | | || |||| | |||| |||||| ||| ||| ||||
Sbjct 1719653 CAACGGATCGCGTGAATTCCTCGACTCGCGCGGGCTGTCTCACCG-CAG---AGAAGGCG 1719708
Query 70071 ATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCG 70130
| |||| || || ||||| ||||| ||| | |||| ||| | |||| ||| ||||
Sbjct 1719709 ACTTGGGCCCCGTCTACGGTTTCCAATGGCGACACTTTGGCGCAGAGTACACAGATTGCG 1719768
Query 70131 AGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACTCTCAAG 70189
| || |||| | ||||| || || |||||| | || | | | || |||| |||||
Sbjct 1719769 ATACCAACTACACCGGTCAAGGCGTCGATCAACTCGCTCA-AGTGATCGACAAGATCAAG 1719827
Query 70190 ACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAA 70249
| ||| || || || | | ||| | | || | ||||| || || | | |
Sbjct 1719828 AACAACCCTACCGACCGTCGCATCCTGCTCAGCGCCTGGAACCCCAAGGACCTCGAACTG 1719887
Query 70250 ATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTT 70284
||||| || || ||||| ||| ||||| || |||||
Sbjct 1719888 ATGGCGCTGCCGCCGTGCCACATGTTT-GCGCAGTT 1719922
>seq3
Length=1272512
Score = 89.7 bits (98), Expect = 8e-13
Identities = 173/254 (68%), Gaps = 6/254 (2%)
Strand=Plus/Minus
Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506
||||| || ||||| || ||| |||||| |||| |||||||| | | || || |
Sbjct 431766 CCGTGGGTAAGGTGACCACCGGAGGGCAGGCCGAGACCCATGATGCGGTCCTGGGGCTGG 431707
Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566
| || | ||| | |||||||||||| | ||||| ||||| || || || ||
Sbjct 431706 AGGAGCGCGGTGAAGGTGGCAAAGTTGGCGGTGGAGCCAGAGTAAGGCTGGACGTTGACG 431647
Query 127567 CCCCATTC---GGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGT 127623
||||| | || ||| | ||||| || ||||| |||||||| ||||
Sbjct 431646 CCCCACACCTTGGGGTCG---AGGTTGAAGGCCTTGAGAGCACGCTGCTGGCAGAGCACC 431590
Query 127624 TCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAG 127683
|||| | || || ||||||||||||| ||||| || ||||| |||||| |||
Sbjct 431589 TCGAGCTGGTCAATGTACTCGTTACCACCGTAGTAGCGGGCGCCGGGGAGACCCTCAGAG 431530
Query 127684 TACTTGTTGATGAG 127697
||||||||| ||||
Sbjct 431529 TACTTGTTGGTGAG 431516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058560836440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |