Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11-
06] 69 sequences; 19,776,778 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq18 125 6e-24
seq11 109 5e-19
>seq18
Length=577775
Score = 125 bits (138), Expect = 6e-24
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863
||| | ||| |||||||| || | ||| || ||| | |||| | ||||| |||||
Sbjct 203634 GTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTG 203693
Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923
||||| ||||||| | || |||||||| || || || ||||| ||||| | || ||
Sbjct 203694 CTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCTTGGATCTT 203753
Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983
||||||||| | ||| ||||||| | ||||| || | |||||||| || || ||
Sbjct 203754 GGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 203813
Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007
||||| || ||||||||||||||
Sbjct 203814 GAGAGTCTTAACAAAGATCTGCAT 203837
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
||||| |||||||| | || || ||||| || | || || ||| | || |
Sbjct 203395 CGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGAAAGGGTACGGCCG 203454
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| || ||||| || ||| |||| || | | |||||||| || || || ||||| |||
Sbjct 203455 TCTTCAAGCTGCTTGCCGGCAAAAATAAGCCGCTGCTGATCGGGTGGGATGCCTTCCTTG 203514
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||||||| | ||| ||||||| | ||||| || | ||||||
Sbjct 203515 TCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCGAGAGTGATG 203574
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || ||||| || ||||||||||||||
Sbjct 203575 GTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 203609
>seq11
Length=758843
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| ||| | || || ||||| || | ||| |||||| | ||| | |||||
Sbjct 158488 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCA 158547
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| || ||| ||||||| | | |||||||| || || ||||| || ||||| | |
Sbjct 158548 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGA 158607
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||||||| | ||| |||||| | || || || | ||||| || ||
Sbjct 158608 ATCTTGGCCTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTA 158667
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| || ||||| || |||||||||||||||
Sbjct 158668 CCGGTCAGAGTCTTGACAAAGATCTGCATG 158697
Score = 96.9 bits (106), Expect = 3e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||||||||| || || ||||||| || | ||||| || ||||| ||||| || ||
Sbjct 158085 ATCCTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTT 158144
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | || || ||||||||| | | | ||| || | | ||||| || | ||| ||
Sbjct 158145 GTCCTGGATCTTGGCCTTGACGTTGTCAATAGTATCCGAGGACTCGACATCGAGCGTAAT 158204
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || || || || || || |||||||| |||||
Sbjct 158205 GGTCTTGCCCGTGAGCGTCTTGACAAAGATTTGCAT 158240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448290813348840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |