Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11-
06] 69 sequences; 19,776,778 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq25 140 2e-28
seq20 125 5e-24
>seq25
Length=141646
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 7851 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 7910
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 7911 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7945
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 19879 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 19938
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 19939 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 19973
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 28045 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 28104
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 28105 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 28139
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 30439 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 30498
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 30499 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 30533
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 1398 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 1457
Query 20007 GGTAATATTTAGCCTTA 20023
||||||||||||||
Sbjct 1458 CCCAATATTTAGCCTTA 1474
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 9858 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 9917
Query 20007 GGTAATATTTAGCCTTA 20023
||||||||||||||
Sbjct 9918 CCCAATATTTAGCCTTA 9934
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 21886 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 21945
Query 20007 GGTAATATTTAGCCTTA 20023
||||||||||||||
Sbjct 21946 CCCAATATTTAGCCTTA 21962
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 32446 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 32505
Query 20007 GGTAATATTTAGCCTTA 20023
||||||||||||||
Sbjct 32506 CCCAATATTTAGCCTTA 32522
>seq20
Length=545247
Score = 125 bits (138), Expect = 5e-24
Identities = 213/309 (69%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 6182 TCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGA 6241
|||| |||| | ||| ||||||||| ||| ||||| | | || |||| ||||
Sbjct 363452 TCGTGATGTCGACGACAAGTTCTACCGATACCGCATGCCTCTCCTCCAGACCAAAATCGA 363511
Query 6242 GGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCT 6301
||| ||||| |||||||| || |||||||| ||||||| | || | ||| | ||
Sbjct 363512 GGGCAAGGGCAACGGTATCAAGACCGTCATCCCCAACATGTCCGACATTGCTCGCTCCCT 363571
Query 6302 CGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCA 6361
| | || || | |||||||| || || | || || ||||| || |||||||||||
Sbjct 363572 CAGCCGTCCCCCGACCTACCCCACCAAGTTCTTTGGCTGCGAGCTCGGCGCTCAGACCTC 363631
Query 6362 GTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCA 6421
||| || | || ||||| || | ||| || ||||| | || || ||| | || |
Sbjct 363632 GTTCGACAAGAAGAACGATCGTTACATTGTCAACGGCGCTCACGACGCTGACCGTCTCCG 363691
Query 6422 GGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGA 6481
|| | || ||||| || || ||||||||| || || | || ||| | ||||| ||
Sbjct 363692 AGAGCTCCTCGACGGTTTCATCGACAAGTTTGTCCTCTGCGGCGACTGCAAGAACCCCGA 363751
Query 6482 GACCGAGCT 6490
|||||| ||
Sbjct 363752 GACCGATCT 363760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946918330339
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |