Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11-
06] 69 sequences; 19,776,778 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq11 150 2e-31
seq18 132 4e-26
seq1 84.2 2e-11
>seq11
Length=758843
Score = 150 bits (166), Expect = 2e-31
Identities = 152/198 (77%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || ||| | |||||||| ||| |||| || || ||||| | ||
Sbjct 158696 ATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACGATCACCCTCGAGGTGGAGTCTTCC 158637
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | |||| || |||||||||||||||||||| ||||| |||||
Sbjct 158636 GACACTATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCTGATCAG 158577
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || ||||||||||| ||| | ||||| ||||||| | ||||||||||||
Sbjct 158576 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTTTCCGATTACAAC 158517
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || || || || |||
Sbjct 158516 ATCCAGAAGGAGTCGACC 158499
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || | || || || ||| |||| || || || || | |
Sbjct 158468 ATGCAGATTTTCGTCAAGACGCTCACAGGAAAGACGATCACACTGGAGGTCGAGTCTTCG 158409
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || | ||| || || || |||||||||||||| || || || ||
Sbjct 158408 GACACGATCGACAATGTGAAAGCCAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 158349
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || || || ||| | ||||| ||| || ||||||| ||||||
Sbjct 158348 CAGCGACTCATTTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTCTCCGACTACAAC 158289
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| || || ||| | || | || | |||||||||||||||
Sbjct 158288 ATTCAGAAGGAGAGCACGTTGCACCTTGTCCTTCGATTGCGCGGAGGT 158241
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || | || || || || | || || || || || || |
Sbjct 158240 ATGCAAATCTTTGTCAAGACGCTCACGGGCAAGACCATTACGCTCGATGTCGAGTCCTCG 158181
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | ||| | |||| || || || |||||||||||||| || ||||| ||
Sbjct 158180 GATACTATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 158121
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || ||||| || || ||| | |||||| ||||| | || || ||||||
Sbjct 158120 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTTTCGGACTACAAC 158061
Query 22399 ATTCAAAAAGA 22409
||||| || ||
Sbjct 158060 ATTCAGAAGGA 158050
>seq18
Length=577775
Score = 132 bits (146), Expect = 4e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || ||| | ||||| || || ||||||| || || || || |
Sbjct 203609 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCT 203550
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || || ||||||||||| || || |||||||||||
Sbjct 203549 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGATCAG 203490
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || ||||| ||||||||||| ||| | || || ||| ||| | ||||| |||||
Sbjct 203489 CAGCGGCTTATTTTTGCCGGCAAGCAGCTTGAAGACGGCCGTACCCTTTCCGACTACAAT 203430
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || || || | || || |||||||| | || ||||||
Sbjct 203429 ATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGCGTCTCCGTGGAGGT 203382
Score = 125 bits (138), Expect = 6e-24
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || |||||||| ||| | ||||| || || |||| || || || || ||
Sbjct 203839 AGATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCT 203780
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
| || ||| | ||| | |||| || || ||||||||||| || || ||||||||||
Sbjct 203779 CTGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGATC 203720
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || || ||||| ||||| || || ||| | ||||| |||||| | ||||| ||||
Sbjct 203719 AGCAGCGACTTATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACA 203660
Query 22397 ACATTCAAAAAGAATCCAC 22415
|||| || || ||||| ||
Sbjct 203659 ACATCCAGAAGGAATCGAC 203641
Score = 102 bits (112), Expect = 7e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| || || ||||| || | || ||||| || ||||||| || || || |
Sbjct 283672 AAGATGCAGATCTTCGTTAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTCGAGTCT 283613
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || ||| | ||| || |||| || || || ||||||||||| || || |||||
Sbjct 283612 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 283553
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || || || || || || || ||| | ||||| || |||| | || || |||
Sbjct 283552 CAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTTGAGGACGGCCACACCCTTTCGGACTAC 283493
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| || || || || ||| | || || || | || |||| || |||
Sbjct 283492 AACATCCAGAAGGAGTCGACCCTCCACTTGGTGCTCCGCCTGCGTGGTGGT 283442
>seq1
Length=2015588
Score = 84.2 bits (92), Expect = 2e-11
Identities = 123/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 22242 AACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACA 22301
||| ||||| || | || || || ||||| || | || ||| | || || ||||
Sbjct 1818475 AACAGGTAAGACCATTACCCTCGAGGTGGAGTCCTCGGACACCATCAACAATGTCAAGGC 1818534
Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361
|| ||||| ||||||||||| || || || || || || || || || || ||||||||
Sbjct 1818535 CAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAA 1818594
Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
||| | ||||| |||||| | || || |||||||| || || || || ||
Sbjct 1818595 GCAGCTCGAGGACGGCCGCACGCTTTCGGACTACAACATCCAGAAGGAGTCGAC 1818648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727647034985
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |