Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11- 06] 69 sequences; 19,776,778 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq12 91.5 3e-13 >seq12 Length=665503 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGC- 280237 |||||||| ||| |||||||||| ||||| |||| || | || || ||| || | Sbjct 460540 GGACCCAACGGTTCGGGTAAGTCGACCCTTGTCAAGCTCATCGTCGGTGACACCGAGCCT 460599 Query 280238 --CACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | ||| | | | |||||||| |||||| || || | ||||||||| |||||| Sbjct 460600 GGCTCTGGTGAGA---TGTGGAAGCACCCCAACTTGGTCATCGGTTACGTCGCCCAGCAC 460656 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 || ||||||||||| || | ||||| |||| ||| ||| | | ||||| | ||||| Sbjct 460657 GCCTTCCACCACATTGACCAGCACCTCGACAAGACCCCTCTCGACTACATGCTCTGGCGT 460716 Query 280356 TA 280357 || Sbjct 460717 TA 460718 Score = 84.2 bits (92), Expect = 4e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| || || |||| | ||||||||||| || |||| ||||| ||||| ||| Sbjct 459706 GGCGAGGACCTTTGCAACTGCCAGTTCTCGCTCGCCTACGGTGCCAAGATCCTGCTCAAC 459765 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || || ||| ||||||||||| || ||| |||||| ||||| || || | Sbjct 459766 ACTGCCACCCTGCGTCTCAAGCGTGGCCACAAGTACGGTCTCTGCGGTCGTAACGGTTCC 459825 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCT 279518 || ||| || || ||||| ||||| | ||||| ||| | || || || ||| Sbjct 459826 GGAAAGTCGACCCTCATGCGTGCCATCACCAACGGCCAGGTCGAGGGTTTCCCT 459879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835891328029