Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11- 06] 69 sequences; 19,776,778 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq18 127 2e-24 seq11 104 2e-17 >seq18 Length=577775 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 |||||| || || || || ||||| || | | ||| || ||||||||||||||||||| Sbjct 203412 CGTCGACTCCTTCTGGATATTGTAGTCGGAAAGGGTACGGCCGTCTTCAAGCTGCTTGCC 203471 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 |||| |||| ||||||||||| ||||| || || ||||| || ||||| || || ||| Sbjct 203472 GGCAAAAATAAGCCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTT 203531 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || || | || ||| || || || || | ||| | |||||||||||||| ||| Sbjct 203532 GACGTTGTCGATGGTGTCAGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTCAGAGT 203591 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 203592 CTTGACAAAGATCTGCAT 203609 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | || || || || | |||||||| || || |||||||| || | Sbjct 203610 ACCCCCGCGAAGACGGAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGA 203669 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| || |||||||| || ||| | || || |||||||| ||||| || Sbjct 203670 AAGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGG 203729 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || ||||| || || ||| || || | || ||| || || || Sbjct 203730 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGAC 203789 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | ||| || || || || ||||| Sbjct 203790 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 203837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| | || | ||||| || || || |||||||| || | Sbjct 283442 ACCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 283501 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||| | |||| ||||||||||| || || | || || |||||||||||||| || Sbjct 283502 AAGGGTGTGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGGGGGG 283561 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | || || | || || Sbjct 283562 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGAC 283621 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAAT 64449 || | ||| | |||||| || || | || || ||||| || ||||| || || Sbjct 283622 CTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTAACGAAGATCTGCATCTTGAT 283675 >seq11 Length=758843 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || ||||||||||| | | |||||| |||| ||||||||||||||| Sbjct 158500 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCG 158559 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| |||||||| || || || || || || || ||||| || || ||| Sbjct 158560 GCAAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGCCTTG 158619 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || | ||||| || | || | ||||| ||||||| ||| Sbjct 158620 ACGTTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTACCGGTCAGAGTC 158679 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 158680 TTGACAAAGATCTGCAT 158696 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| |||||||||| ||| || || || | ||| || || ||||||||||| || | Sbjct 158241 ACCTCCGCGCAATCGAAGGACAAGGTGCAACGTGCTCTCCTTCTGAATGTTGTAGTCGGA 158300 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || |||| || |||||||| || || ||||||| ||||||||||| || || Sbjct 158301 GAGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCAGGCGG 158360 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 || || || || || || | | || ||||| ||| || | || || | || | Sbjct 158361 GATACCCTCCTTGTCCTGGA-TCTTGGCTTTCACATTGTCGATCGTGTCCGAAGACTCGA 158419 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||| || || | || || |||||||| ||||| Sbjct 158420 CCTCCAGTGTGATCGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 158468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644369056360