Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11- 06] 69 sequences; 19,776,778 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq19 192 7e-44 seq9 105 8e-18 >seq19 Length=568126 Score = 192 bits (212), Expect = 7e-44 Identities = 909/1423 (64%), Gaps = 37/1423 (3%) Strand=Plus/Minus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 |||||||| ||||| || | | |||||||||| |||||| ||||| |||||||| Sbjct 49744 AACTCACCGGCGAGCACACGACGCGAGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCG 49685 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 ||| || | ||| || || ||||| ||||||||||| || | ||||| |||| Sbjct 49684 TTGAAGCCGAGGATCTGACTGGTCGAGGCGGTGGGCATGGGAGCGAGCAGAAGCGAGTTG 49625 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC 116055 || ||||| | || ||||||| || ||||||| || | | | Sbjct 49624 CGCAGACCGTGCTTGGCGATCTTGGCCTTGAGCTCGGCCCAGTCCCAGAGGTCCGAGGGG 49565 Query 116056 TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 116115 | ||||||| || |||| || ||| || || || ||||| || | | ||| Sbjct 49564 GTGACGCCCCACATGTCGTACTGCAGCTCACCCTGCGAAGCGGGCGAGCCGGCGTAGGTC 49505 Query 116116 TCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGTGATACAT 116174 || || | ||| | || |||| ||| | | |||| ||||| || ||||| || || Sbjct 49504 TCGTAGGTGCCGTGCTGCTGAGCCAGCTCGCACGATCGC-TCGAGAGCGGCGTGGTAGAT 49446 Query 116175 TGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGACGGC 116233 ||||| || || | | || | |||||| || ||||| ||| || | | Sbjct 49445 GGTCTCGAAGATATGCACGTTGAGACGACGAGCCTCGGGAGACTCAAAGGCGTAGCC--C 49388 Query 116234 ACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 116292 | | || || | || || ||||| |||||||||| || || || || || | ||| Sbjct 49387 ATGATCATGAAGGCGTCGGCAAGACCCTGGACACCGATACCGATGGGACGGTGGCGCATG 49328 Query 116293 TTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGA 116349 || || |||| || |||| ||||| || | || | ||||| | | | || || Sbjct 49327 TTGGA---TCGACGGGCCTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTTAAGG 49271 Query 116350 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA--CTGCGAGTCT 116407 || ||| || |||| | || || || || || | | || | || | | | Sbjct 49270 TTCTTGCAGATGGCCTTGGCGACCTCGTGCAGACGTTTGAAGTCGTACGTCTTGGCGACG 49211 Query 116408 CT-TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCC 116466 || ||| | | || |||||||| || |||| || || |||| ||| || Sbjct 49210 GGGTCGATGA---AGGTGGGGAGGGCGATCGAGGCCAAGTTGCAGACAGCCACCTCGTCG 49154 Query 116467 TTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTC 116526 | ||||||| ||||| || || ||||| || || | ||| |||||||| | |||| Sbjct 49153 GGGGCGCTGTACTCGATAATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTC 49094 Query 116527 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCC 116586 || || || ||| |||| |||||||||||||| || | || | || ||||| Sbjct 49093 TTCTGGTTGCTCTTGCGGTTAGCGGCATCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCG 49034 Query 116587 GTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCG 116645 || || |||| ||| || || | ||| | | || | | || | || ||| ||||| || Sbjct 49033 GTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGGGCCTTG-ACGGTGCGCTTGGCACG 48975 Query 116646 CCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGA 116704 ||||| ||||||| ||||||| ||||||||| || || ||| || | || Sbjct 48974 GCCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTC-GCCGTAGCAGTCAGCGA 48916 Query 116705 GCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 116764 | || || || | || || | ||| ||||| | || || ||| |||| ||||| Sbjct 48915 GGCCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCA 48856 Query 116765 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 116824 ||||||| || || | |||||| || ||||||| || || || | || || | | Sbjct 48855 TGAAGAGATCGGGCACCCAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTGC 48796 Query 116825 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 116884 | || || || | || | || || | || |||| |||||| || || | ||| | Sbjct 48795 CGTGGTTCTTGCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAACGTAAA 48736 Query 116885 CCGCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGT 116938 || | | || | |||| ||| |||||| || || | || || || Sbjct 48735 TGGCAAAGGCACC---GGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGT 48679 Query 116939 TAAATACGCGAAGCATTGGAATGATACCAT--CAGATTGGCCATTTGTCCCCCGAATACG 116996 | || ||||| ||||| || | |||||| | | || || || || || ||| Sbjct 48678 TGAAGACGCGGAGCATGGGCACGATACCGTTGCTGA--CACCGTTGGTACCGGCAATGTA 48621 Query 116997 AGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGAT 117056 || | || | | || |||||||| | || ||||| || || ||| ||||| Sbjct 48620 GGAACCGGTGCCGCGGATGCAGTGGATGTTGAGGCCGATACCACCGGCGGTCTTGGAGAT 48561 Query 117057 TTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGAT 117116 || ||| | |||| || ||||||| |||||||||||||| |||| | | || Sbjct 48560 CATGGCACACGTCTTGAGCGTGTCGTAGATGCCATCGATCGAGTCGTCCTTCATGGTGAC 48501 Query 117117 GAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGC 117176 ||||||||| ||| | || || || ||||| |||||||||||||| || | || Sbjct 48500 GAGGAAGCACGACGAGAGCTGAGGGTGCGGGGTACCTGCGTTGAAGAGGGTGGGGGAGGC 48441 Query 117177 GTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTT 117235 ||| | || ||| ||| ||||| | ||||||||| | | | ||||| | Sbjct 48440 GTGTGT-AAAGTACTTTTGCGACATGAGGTTGTAGGTCTCAATGGCGCTCTCGATGTCCT 48382 Query 117236 CCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 ||||| ||||||| | ||| ||||| | ||||| ||||| Sbjct 48381 GGCCGTGGATACCGACGGCGACACGCATGAGCATGTGCTGGGG 48339 >seq9 Length=823499 Score = 105 bits (116), Expect = 8e-18 Identities = 172/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| ||||| ||||| || |||||||| || || |||||| ||||| Sbjct 593885 GCAAAGTCGGTGTGCAGACCTTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGACCG 593944 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | || ||||| ||||||||||| Sbjct 593945 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATG 594004 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATC-AA 127697 || || || || || || | ||||||||||| |||| ||| | |||| | | Sbjct 594005 CCTTCAACGGCGGCAAAGGCGACGAGACGCTCGGCGAAAGTGGCGCG--CTTGTCGCTGA 594062 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 ||| || |||||| | || || | || || |||| ||||| || || |||| Sbjct 594063 TCCATCGCAGCGCCCAGTCGGCTTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCAA 594122 Query 127758 AGAG 127761 |||| Sbjct 594123 AGAG 594126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506670850040