Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11-
06] 69 sequences; 19,776,778 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq19 192 7e-44
seq9 105 8e-18
>seq19
Length=568126
Score = 192 bits (212), Expect = 7e-44
Identities = 909/1423 (64%), Gaps = 37/1423 (3%)
Strand=Plus/Minus
Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935
|||||||| ||||| || | | |||||||||| |||||| ||||| ||||||||
Sbjct 49744 AACTCACCGGCGAGCACACGACGCGAGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCG 49685
Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995
||| || | ||| || || ||||| ||||||||||| || | ||||| ||||
Sbjct 49684 TTGAAGCCGAGGATCTGACTGGTCGAGGCGGTGGGCATGGGAGCGAGCAGAAGCGAGTTG 49625
Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC 116055
|| ||||| | || ||||||| || ||||||| || | | |
Sbjct 49624 CGCAGACCGTGCTTGGCGATCTTGGCCTTGAGCTCGGCCCAGTCCCAGAGGTCCGAGGGG 49565
Query 116056 TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 116115
| ||||||| || |||| || ||| || || || ||||| || | | |||
Sbjct 49564 GTGACGCCCCACATGTCGTACTGCAGCTCACCCTGCGAAGCGGGCGAGCCGGCGTAGGTC 49505
Query 116116 TCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGTGATACAT 116174
|| || | ||| | || |||| ||| | | |||| ||||| || ||||| || ||
Sbjct 49504 TCGTAGGTGCCGTGCTGCTGAGCCAGCTCGCACGATCGC-TCGAGAGCGGCGTGGTAGAT 49446
Query 116175 TGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGACGGC 116233
||||| || || | | || | |||||| || ||||| ||| || | |
Sbjct 49445 GGTCTCGAAGATATGCACGTTGAGACGACGAGCCTCGGGAGACTCAAAGGCGTAGCC--C 49388
Query 116234 ACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 116292
| | || || | || || ||||| |||||||||| || || || || || | |||
Sbjct 49387 ATGATCATGAAGGCGTCGGCAAGACCCTGGACACCGATACCGATGGGACGGTGGCGCATG 49328
Query 116293 TTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGA 116349
|| || |||| || |||| ||||| || | || | ||||| | | | || ||
Sbjct 49327 TTGGA---TCGACGGGCCTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTTAAGG 49271
Query 116350 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA--CTGCGAGTCT 116407
|| ||| || |||| | || || || || || | | || | || | | |
Sbjct 49270 TTCTTGCAGATGGCCTTGGCGACCTCGTGCAGACGTTTGAAGTCGTACGTCTTGGCGACG 49211
Query 116408 CT-TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCC 116466
|| ||| | | || |||||||| || |||| || || |||| ||| ||
Sbjct 49210 GGGTCGATGA---AGGTGGGGAGGGCGATCGAGGCCAAGTTGCAGACAGCCACCTCGTCG 49154
Query 116467 TTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTC 116526
| ||||||| ||||| || || ||||| || || | ||| |||||||| | ||||
Sbjct 49153 GGGGCGCTGTACTCGATAATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTC 49094
Query 116527 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCC 116586
|| || || ||| |||| |||||||||||||| || | || | || |||||
Sbjct 49093 TTCTGGTTGCTCTTGCGGTTAGCGGCATCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCG 49034
Query 116587 GTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCG 116645
|| || |||| ||| || || | ||| | | || | | || | || ||| ||||| ||
Sbjct 49033 GTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGGGCCTTG-ACGGTGCGCTTGGCACG 48975
Query 116646 CCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGA 116704
||||| ||||||| ||||||| ||||||||| || || ||| || | ||
Sbjct 48974 GCCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTC-GCCGTAGCAGTCAGCGA 48916
Query 116705 GCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 116764
| || || || | || || | ||| ||||| | || || ||| |||| |||||
Sbjct 48915 GGCCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCA 48856
Query 116765 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 116824
||||||| || || | |||||| || ||||||| || || || | || || | |
Sbjct 48855 TGAAGAGATCGGGCACCCAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTGC 48796
Query 116825 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 116884
| || || || | || | || || | || |||| |||||| || || | ||| |
Sbjct 48795 CGTGGTTCTTGCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAACGTAAA 48736
Query 116885 CCGCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGT 116938
|| | | || | |||| ||| |||||| || || | || || ||
Sbjct 48735 TGGCAAAGGCACC---GGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGT 48679
Query 116939 TAAATACGCGAAGCATTGGAATGATACCAT--CAGATTGGCCATTTGTCCCCCGAATACG 116996
| || ||||| ||||| || | |||||| | | || || || || || |||
Sbjct 48678 TGAAGACGCGGAGCATGGGCACGATACCGTTGCTGA--CACCGTTGGTACCGGCAATGTA 48621
Query 116997 AGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGAT 117056
|| | || | | || |||||||| | || ||||| || || ||| |||||
Sbjct 48620 GGAACCGGTGCCGCGGATGCAGTGGATGTTGAGGCCGATACCACCGGCGGTCTTGGAGAT 48561
Query 117057 TTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGAT 117116
|| ||| | |||| || ||||||| |||||||||||||| |||| | | ||
Sbjct 48560 CATGGCACACGTCTTGAGCGTGTCGTAGATGCCATCGATCGAGTCGTCCTTCATGGTGAC 48501
Query 117117 GAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGC 117176
||||||||| ||| | || || || ||||| |||||||||||||| || | ||
Sbjct 48500 GAGGAAGCACGACGAGAGCTGAGGGTGCGGGGTACCTGCGTTGAAGAGGGTGGGGGAGGC 48441
Query 117177 GTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTT 117235
||| | || ||| ||| ||||| | ||||||||| | | | ||||| |
Sbjct 48440 GTGTGT-AAAGTACTTTTGCGACATGAGGTTGTAGGTCTCAATGGCGCTCTCGATGTCCT 48382
Query 117236 CCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278
||||| ||||||| | ||| ||||| | ||||| |||||
Sbjct 48381 GGCCGTGGATACCGACGGCGACACGCATGAGCATGTGCTGGGG 48339
>seq9
Length=823499
Score = 105 bits (116), Expect = 8e-18
Identities = 172/244 (70%), Gaps = 4/244 (2%)
Strand=Plus/Plus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||| ||||| ||||| || |||||||| || || |||||| |||||
Sbjct 593885 GCAAAGTCGGTGTGCAGACCTTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGACCG 593944
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
||||||||||| |||||||| | |||||| || | || ||||| |||||||||||
Sbjct 593945 GGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATG 594004
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATC-AA 127697
|| || || || || || | ||||||||||| |||| ||| | |||| | |
Sbjct 594005 CCTTCAACGGCGGCAAAGGCGACGAGACGCTCGGCGAAAGTGGCGCG--CTTGTCGCTGA 594062
Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757
||| || |||||| | || || | || || |||| ||||| || || ||||
Sbjct 594063 TCCATCGCAGCGCCCAGTCGGCTTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCAA 594122
Query 127758 AGAG 127761
||||
Sbjct 594123 AGAG 594126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613506670850040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |