Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11- 06] 69 sequences; 19,776,778 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq19 163 5e-35 >seq19 Length=568126 Score = 163 bits (180), Expect = 5e-35 Identities = 377/562 (67%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 203849 GTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGG 203908 ||||||||||||||||| ||||||| || | | ||| ||||| | |||||||| || Sbjct 50095 GTGAACTGAATGGCGTTGGAGGCAGGCTTGGTACGCAGGTAGTAGGTACCGGTCTTGAGA 50036 Query 203909 CCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATG 203968 ||||||| ||| ||||| | |||||| || | || | || | | | || | | | | Sbjct 50035 CCCTTCTTCCAGCCGTAGAAGTGCATCGAGGTGAGCTGGCCAAAGGTAGGCGCCGAGAGG 49976 Query 203969 TGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATA 204028 |||||||| || ||||| ||| |||||||| | || || |||||||| | ||| Sbjct 49975 TGAATGTTGAGCGACTGCGACTGGCAGATGAAAGCACCACGGTCGGCGGCCATGTCGATG 49916 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGTGTTGAGGCAC 204087 |||| |||||| |||||||| || |||||| | | | ||| || || | | || | Sbjct 49915 ATGGCCTTCTGGCTGATCTCCCAGACGGTCTTGTAGAGCTTCT-TGATGCGGTCGGGGA- 49858 Query 204088 ATCTTCC---CACGTCCT-GATCGAGCCGTTGTCGGCCATCA---GTCTCATCCTCGTCT 204140 | || ||||| || ||| || ||| || || || | | || || |||| | Sbjct 49857 ---TGCCGGGCACGTTCTGGATGGAACCGCCGTGAGCGATGATGCGGTTCTTCATCGTGT 49801 Query 204141 CCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAA 204200 | | ||||| ||| | || ||||| || | || ||||| | | ||| | Sbjct 49800 CGT---TCCACAGACCCTGCTCGACGAGCTCGCGGAGCAACCAAGGGTTCACCACCTGGA 49744 Query 204201 AGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGT 204260 | || |||| ||||| | || | | | | |||| ||| | || ||||| ||||| Sbjct 49743 ACTCACCGGCGAGCACACGACGCGAGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGT 49684 Query 204261 TGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGC 204320 || ||||| |||||| ||| ||| |||||||||||||| || || || ||||||| Sbjct 49683 TGAAGCCGAGGATCTGACTGGTCGAGGCGGTGGGCATGGGAGCGAGCAGAAGCGAGTTGC 49624 Query 204321 GCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTT 204380 ||| ||||| || || | || ||| || || |||||| | | ||| Sbjct 49623 GCAGACCGTGCTTGGCGATCTTGGCCTTGAGCTCGGCCCAGTCCCAGAGGTCCGAGGGGG 49564 Query 204381 TCACGCCCCACATGTCGAACTG 204402 | ||||||||||||||| |||| Sbjct 49563 TGACGCCCCACATGTCGTACTG 49542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154514178640