Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11-
06] 69 sequences; 19,776,778 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq1 156 3e-33
>seq1
Length=2015588
Score = 156 bits (172), Expect = 3e-33
Identities = 434/659 (66%), Gaps = 44/659 (7%)
Strand=Plus/Minus
Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824
|||| ||||| || || ||||| | ||| ||||| |||||| ||||||||| ||
Sbjct 1720182 TGGGGAAGGGCAGAGGATCTCTCTCCAACTGCACCTTCAACGGTTCTACGTGATCCTTGT 1720123
Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884
||||||| || || |||| || | | || || ||| ||||| |||| || | |
Sbjct 1720122 AGACGTGCGCATCGCCCATGGCGAGCACCAATTCTTTAGGTTCGCAATCGGTCACCTTGG 1720063
Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944
| |||||||| || | |||| |||||| || ||||| || || || || | || | |
Sbjct 1720062 CGATCATGTAGGTCAACAGAGCGTAGCTAGCAATGTTGAACGGAACGCCCAAACCGAGAT 1720003
Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCT-CT-----CCGTCGC------------ 29986
| | ||| | |||||| | ||||||||||| | || || ||||
Sbjct 1720002 CGCACGAACGCTGGTACATTTGACACGAGAGGTGCTTTTTGCCCTCGCCGCGGGCGTAGG 1719943
Query 29987 --TC----------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGA 30031
|| ||| | ||||| | ||| |||||||||| || || ||||| |
Sbjct 1719942 CGTCGAGGTTCGAGACGAAGAACTGCGCAAACA---TGTGGCACGGCGGCAGCGCCATCA 1719886
Query 30032 GGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC 30091
| | | ||| |||||||||||||||| | | |||||| | ||| |||||||||
Sbjct 1719885 GTTCGAGGTCCTTGGGGTTCCAGGCGCTGAGCAGGATGCGACGGTCGGTAGGGTTGTTCT 1719826
Query 30092 TGATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTC 30150
|||| ||| | | || || || ||||| || || || | ||||| || ||
Sbjct 1719825 TGATCTTGTCGATCAC-TTGAGCGAGTTGATCGACGCCTTGACCGGTGTAGT-TGGTATC 1719768
Query 30151 -ATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
|| ||||||||||| || || || | ||| ||||| ||||| || || |||| |||
Sbjct 1719767 GCAATCTGTGTACTCTGCGCCAAAGTGTCGCCATTGGAAACCGTAGACGGGGCCCAAGTC 1719708
Query 30210 TCCCTCTTCCCTGTGCTCGA-AGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCG 30267
|| ||| | ||| || ||||| | | ||| | || || | || |||||| ||
Sbjct 1719707 GCCTTCTCTGCGGTG--AGACAGCCCGCGCGAGTCGAGGAATTCACGCGATCCGTTGCCG 1719650
Query 30268 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAAC 30327
|||||||| | ||| ||||| || | |||| ||| || | || || || |||
Sbjct 1719649 TCCCAGATGTGTACGCCCTTATCTGTGAGCAGTTTCGAATCGGTCTTGCCAGCAACAAAC 1719590
Query 30328 CACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386
|| || |||||||| | ||| | ||||||| | |||||| ||||| || || ||
Sbjct 1719589 CAGAGGAGCTCCTCGAGCACGCCACGGAAAAAGACACGCTTGGTGGTGAGCAGAGGCAA 1719531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408617256378137
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |