Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11- 06] 69 sequences; 19,776,778 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq9 300 2e-75 seq19 167 3e-35 seq6 129 8e-24 seq2 122 1e-21 seq15 111 2e-18 >seq9 Length=823499 Score = 300 bits (332), Expect = 2e-75 Identities = 404/550 (73%), Gaps = 27/550 (5%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| |||||||||||||| ||||| ||||||||||| ||| |||||| Sbjct 594439 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATCGACC 594381 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| |||||| ||| | |||| |||| ||||| || Sbjct 594380 TTTCCAAGGATCTCCACG----ACTGGGACAACAAGCTCAACGACAACGAACGCCACTTT 594325 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||||||||||||||| || |||||| ||| || ||||| ||||||||| | Sbjct 594324 ATCTCGCACGTCCTCGCCTTCTT-CGCCGCTTCCGACGGTATCGTCAACGAGAACCTCGT 594266 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || || || | ||||| ||| | ||||| |||| || ||||| |||||||| Sbjct 594265 CGAGCGTTTCAGCTCCGAGGTGCAAGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGAT 594206 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || |||||||||||||| |||||||||||| | || Sbjct 594205 CATGATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACCTACATTCGCGA 594146 Query 1456068 CCCGGTCGAGAAG---GACCACCTCTTTCGCGCCATCGACACGGT-GCCGTCGGTGAGGA 1456123 || |||| || || | ||||||| |||| |||| || | ||||| || | | Sbjct 594145 GCC---CGAGCAGCGCGAGCTCCTCTTTGACGCCGTCGAGACCATCCCCGTC-GTCAAGC 594090 Query 1456124 AAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGC 1456182 | || |||||||||||| || ||||||| | | || | || |||||| ||||||| Sbjct 594089 AGAAAGCCGACTGGGCGCTGCGATGGATCAGCGACAAG---CGCGCCACTTTCGCCGAGC 594033 Query 1456183 GGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | ||||||| |||||||| ||| || |||||||| ||||| ||| ||| | |||||| Sbjct 594032 GTCTCGTCGCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCCTTCGCCTCCATCT 593973 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGT 1456301 | ||||||||||||||||| ||||||||||||| || ||| |||||| | ||| Sbjct 593972 TCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTC-TCACCTTCTCCAACGAGCTCATCTCG 593914 Query 1456302 CGCGACGAAG 1456311 |||||||||| Sbjct 593913 CGCGACGAAG 593904 >seq19 Length=568126 Score = 167 bits (184), Expect = 3e-35 Identities = 275/395 (70%), Gaps = 19/395 (5%) Strand=Plus/Plus Query 259790 GTCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCC 259849 |||| ||||| |||||| | |||||||||||||||||| | || || || | Sbjct 48327 GTCGCAGAGCGTCCCCAGCACATGCTCATGCGTGTCGCCGTCGGT-ATCCACGGCCAG-- 48383 Query 259850 GACGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTG 259909 ||| |||| | || | ||| |||||| | ||||||||| ||| Sbjct 48384 GACATCGAGAGCGCCATTGAG------------ACCTACAACCTCATGTCGCAAAAGTAC 48431 Query 259910 TTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCG 259969 || || || | ||||| ||||| || || || || |||| ||| ||| |||||| Sbjct 48432 TTTACACACGCCTCCCCCACCCTCTTCAACGCAGGTACCCCGCACCCTCAGCTCTCGTCG 48491 Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| || | |||||||| ||| |||||||| |||||||| |||||||||||| | Sbjct 48492 TGCTTCCTCGTCACCATGAAGGACGACTCGATCGATGGCATCTACGACACGCTCAAGACG 48551 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCC 260089 || || | ||||||||| | ||||| || ||||| | | ||| | |||| | Sbjct 48552 TGTGCCATGATCTCCAAGACCGCCGGTGGTATCGGCCTCAACATCCACTGCATCCGCGGC 48611 Query 260090 GCGGGCGCCTACGTGGCGGGCACCAACG--GCCAGTCCAACGGCCTTGTGCCCATGCTTC 260147 | || ||||| | || || ||||||| | ||| |||||| | ||||||||||| | Sbjct 48612 ACCGGTTCCTACATTGCCGGTACCAACGGTGTCAG--CAACGGTATCGTGCCCATGCTCC 48669 Query 260148 GCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||| || ||| |||| || ||||||||||||||| Sbjct 48670 GCGTCTTCAACAACACCGCCCGCTACGTCGACCAG 48704 Score = 114 bits (126), Expect = 2e-19 Identities = 299/452 (66%), Gaps = 20/452 (4%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||||||| ||| | || || |||||| | ||| || Sbjct 48705 GGTGGCAACAAGCGTCCCGGTGCCTTTGCCATTTACGTTGAGCCATGGCACTCGGACGTC 48764 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | || |||||| |||||||||||||||| ||| || | | || || Sbjct 48765 TTTGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGG-AGGAGGTGC-----GTGCCCGA 48818 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGT-GACCGG--C 261964 || ||||| |||| || ||| | ||| || || ||| | ||| || | | | Sbjct 48819 GAGCTCTTCTACGCACTCTGGGTGCCCGATCTCTTCATGAAGAG---GGTCGAGCAGAAC 48875 Query 261965 CGCGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCG 262024 |||||||||||||| | ||||| |||| |||||||| || ||||| |||| Sbjct 48876 GGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGCCTCGCTGACTGCTACGGCGAC 48935 Query 262025 GCCTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNC---GCGGACCGTCGTG 262081 | ||||| |||||| ||| | ||| |||||| | Sbjct 48936 GAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGCCGTGCCAAGCGCACCGTCAAG 48995 Query 262082 CCCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTAC 262141 || || || || |||||| ||||| ||| | | || | ||||||||||| |||| | Sbjct 48996 GCC-CA-GA-AGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCGGCAACCCCTTC 49052 Query 262142 ATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACA 262201 || |||||||||| |||| |||| | ||||||||| ||||||| ||||||| | | Sbjct 49053 ATCCTCTACAAGGATGCCGCTAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCA-A 49111 Query 262202 GAG-GCCAACCTGTGCACCGAGATCGTCCAGT 262232 | | ||||| ||||||||||||| || ||| Sbjct 49112 GTGCTCCAACTTGTGCACCGAGATTATCGAGT 49143 >seq6 Length=877045 Score = 129 bits (142), Expect = 8e-24 Identities = 313/466 (67%), Gaps = 6/466 (1%) Strand=Plus/Minus Query 332874 AGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTG-TTGCAG 332932 |||||| |||||| || | | || | | |||||||| | ||| | || ||||| Sbjct 573131 AGCGCAAGATGGCGCATCTGGATTGAATCGGCTCGATGATC-TTGTTGCTCTGGTTGCAA 573073 Query 332933 GCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGTTG 332991 || | | || || || || |||| || | |||||||| |||| | || ||||| || Sbjct 573072 GCGAAGCAGAAGCGGGTGGTGTTGGAGTGAATCTCCATGGTTCGAC-GCAGAGCCTGCTG 573014 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 || || ||||| | || |||||||||||||||||||||||||||||| | || | || Sbjct 573013 CGCTGCGGGCGTCATGCTGTCGGCCTCGTCGAGGATGATGATCTTGTGCCTTCCTGGTGG 572954 Query 333052 CAGATCAACCCTTTTC-GAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGC 333110 || || | ||| ||| || ||||| | |||||||| || || || || | Sbjct 572953 GAGCGAGACTTTCTTCTGAGCAAACGT-CTTGATTTTGTTGCGCACCACATCGACACCTC 572895 Query 333111 GCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGC 333170 ||||||| || |||||||| |||||||| | || | | || | ||||| || | | Sbjct 572894 GCTCGTCGGAAGCGTTGAGCTCGAGCACACCTTCCTTGTACGCATCGCCCAAAAGTGCAC 572835 Query 333171 GCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAGGT 333230 | || |||||| | ||||| ||||| |||||||| |||| | | || | Sbjct 572834 GAGCGAGGCACAGCACCGAGGTGGTTTTGCCAATGCCGGGCAAGCCCGAGATGAGCAGAT 572775 Query 333231 TGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGCCGA 333290 || |||||||||| | | |||||| | | | || || || |||||||| Sbjct 572774 GCGGACAGTTGCCGTCGTTCTGAATTACTTTGAGGCGGTCGATGGTGTCCTTGTTGCCGA 572715 Query 333291 CAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGGGAG 333336 | | |||||||| ||| || | |||||||| | ||| || || Sbjct 572714 CCACATCGTCGAGTCGCATGGGCCTATACTTTTCTACCCAGGGCAG 572669 >seq2 Length=1573848 Score = 122 bits (134), Expect = 1e-21 Identities = 174/244 (71%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| |||||| |||||||||||||| |||||| || | | ||| Sbjct 193570 TACTCGACCTACATCTACCGTGTGCTCAAGCAGGTCCACCCCGACACTGGT-----ATC- 193623 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||| | || | |||||||| ||| | ||||| |||| ||||||| | Sbjct 193624 TCGAACAAGGCCATGGCCATTCTCAACTCGTTCGTCCAGGACATCTTCGAGCGCATCGCC 193683 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || |||||| || || || ||||||| || ||| |||| |||||| Sbjct 193684 ACTGAGGCCTCCAAGCTCGCTTCCTACAACAAGAAGTCGACCATCTCGTCGCGAGAGATC 193743 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||||||||| ||||| ||| | | ||| || || ||| ||||||| |||| || || Sbjct 193744 CAGACCGCCGTCCGCCTCATCCTCCCCGGTGAGCTCTCCAAGCACGCCATCTCGGAAGGT 193803 Query 725139 ACCA 725142 |||| Sbjct 193804 ACCA 193807 >seq15 Length=627187 Score = 111 bits (122), Expect = 2e-18 Identities = 203/294 (69%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 1817497 CCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGGGCCACGTTCATGG--TGT 1817554 || |||| ||||||||||||||||||||| || ||| | | ||| |||| | | Sbjct 605574 CCCATGACGGGCTTGTTGGCCTGCGGCGAGACAATCTGACGCGGCACC--CATGCAATCT 605517 Query 1817555 GCGTCACCTCGGCGCGCGCGTCTCAGA-CTGGGGCACATGGAGGTTCATCTCGTCGCCGT 1817613 ||| | ||||||||||| ||| | ||||||||| || | |||||||||||| |||| Sbjct 605516 GCGAGAGCTCGGCGCGCGTCTCTTCGCTCTGGGGCACGTGCAAGTTCATCTCGTCACCGT 605457 Query 1817614 CAAAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCA 1817673 | || ||||| ||||||| | |||||| ||||||| || | ||| | | || Sbjct 605456 CGAAATCGGCGTTGTAGGGGGGCGTGACACTGAGGTTGAGACGGAAGGTGGAGTAGTCCA 605397 Query 1817674 TGGGCACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCA 1817733 || || | | ||||| | |||||| | |||| || || || || ||||| | | Sbjct 605396 TGAGCTTGATCCTGTGCGACATCATGGACATCTTGTGCAGCGAAGGTTGACGGTTGAATA 605337 Query 1817734 CCACGGCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACCCAATTTGCAGCG 1817787 ||| |||||| | ||||| |||||||| |||| || ||||||| Sbjct 605336 GCACATAGTCGCCATCCTTGAGGTGGCGCTCGACAATCCAGCCGGGCTGCAGCG 605283 Score = 96.9 bits (106), Expect = 5e-14 Identities = 163/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 1818078 GGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCACCTCG 1818137 |||||||| ||||||||| ||||||| | | |||| | |||||| || |||||| Sbjct 605157 GGCGTCACACGCTCGGGATAGGTGAGGTTACGGGCGATGGACTTGGGCACACCGACCTCG 605098 Query 1818138 TCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTG 1818197 || | || | |||||| | | ||||||| || || | |||||||| |||||| Sbjct 605097 TCGAGCTCGAGTAAGGGGTCACCGGTAATGACGGTTCGGGCCGAGAAGTTGACACGCTTG 605038 Query 1818198 CCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCCACGAGGCCCTTG 1818257 ||||| | || ||||||| | ||| ||||| ||||| || ||| | || |||| Sbjct 605037 CCCATCAAGTTTCCGCGGAGACGGCCTTCCTTTCCCTTCAAACGCGCACGGATCGACTTG 604978 Query 1818258 GTGGGCTTGCC---CGACCGTTGGGTCGACTGCTTTTGGCCGCGGATGTCGTTGT 1818309 ||||| |||| |||| || | | |||| ||| ||| |||||||||| Sbjct 604977 ATGGGCCTGCCGCTCGAC---TGCATGGCCTGCGGTTGACCGGCAATGTCGTTGT 604926 Score = 86.0 bits (94), Expect = 9e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 1816145 CGGCGCTGGATGTAGCCACGTC-CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCG 1816203 || ||||||||||| || ||| |||||||||||||||||||||||| || || || || Sbjct 606531 CGACGCTGGATGTAACCG-GTCTCGGCGGTCTTGACGGCCGTGTCGATAAGACCTTCTCG 606473 Query 1816204 GCCGCCGATCATGTGCAAAAACATCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGCG 1816263 ||| | || ||| || || | ||| | | |||| || ||| ||||||||| Sbjct 606472 ACCGGCCATGGCGTGGAAGAAGAACTCTTGAGCCGTGAGACCTCGCAGGTACGAGTTCTC 606413 Query 1816264 CACAAAGCCGCGGCTCTCGGG 1816284 |||||||| || |||||||| Sbjct 606412 GACAAAGCCACGACTCTCGGG 606392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177804544823178