Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11-
06] 69 sequences; 19,776,778 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq18 158 1e-33
seq11 150 2e-31
seq1 84.2 2e-11
>seq18
Length=577775
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||||||||||||||| | || ||||| || || || | ||
Sbjct 203609 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCT 203550
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || || |||||||| |||||||| |||||||||||
Sbjct 203549 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGATCAG 203490
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | |||||||| || | |||||| | ||| ||||||| |||||
Sbjct 203489 CAGCGGCTTATTTTTGCCGGCAAGCAGCTTGAAGACGGCCGTACCCTTTCCGACTACAAT 203430
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || ||||||||||| | || |||||||||||| | || || ||
Sbjct 203429 ATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGCGTCTCCGTGGAGG 203383
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||||| ||||||||| | || || || || || || | ||
Sbjct 203837 ATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 203778
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || || |||||||| |||||||| |||||||||||
Sbjct 203777 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGATCAG 203718
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | || || || || | || ||| | || ||||||| ||||||
Sbjct 203717 CAGCGACTTATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 203658
Query 27168 ATTCAAAAGGAGTCGAC 27184
|| || ||||| |||||
Sbjct 203657 ATCCAGAAGGAATCGAC 203641
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || || ||| | || ||||| || || || | ||
Sbjct 283669 ATGCAGATCTTCGTTAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTCGAGTCTTCG 283610
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || || || ||||| || ||||| || ||||| ||
Sbjct 283609 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 283550
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| || || || | || ||| | ||| |||| || ||||||
Sbjct 283549 CAGCGCCTGATCTTCGCTGGTAAGCAGCTTGAGGACGGCCACACCCTTTCGGACTACAAC 283490
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || |||||||||||| | || ||||| | || |||| |||||
Sbjct 283489 ATCCAGAAGGAGTCGACCCTCCACTTGGTGCTCCGCCTGCGTGGTGG 283443
>seq11
Length=758843
Score = 150 bits (166), Expect = 2e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| ||||| || ||||||||||| ||| | || || || || ||||| | ||
Sbjct 158697 CATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACGATCACCCTCGAGGTGGAGTCTTC 158638
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||| | || || | ||||| || ||||||||||| || || || ||||| |||||
Sbjct 158637 CGACACTATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCTGATCA 158578
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | |||||||| || | || ||| | ||| |||||||||||||
Sbjct 158577 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTTTCCGATTACAA 158518
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||||||| | || |||| | ||| | || ||||| ||
Sbjct 158517 CATCCAGAAGGAGTCGACCCTCCACCTGGTCCTCCGTCTCCGTGGTGGTAT 158467
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || || || || |||||| | ||||| || || || || | ||
Sbjct 158240 ATGCAAATCTTTGTCAAGACGCTCACGGGCAAGACCATTACGCTCGATGTCGAGTCCTCG 158181
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | ||||| || || || ||||| || || || || ||||| ||
Sbjct 158180 GATACTATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 158121
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | || || || || |||| || || || |||| || ||||||
Sbjct 158120 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTTTCGGACTACAAC 158061
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||| |||||| ||||| || | || | ||| |||| || ||
Sbjct 158060 ATTCAGAAGGAGAGCACCTTGCACCTCGTCCTCCGTCTGCGTGGCGG 158014
>seq1
Length=2015588
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071
|| || ||| | ||||| || || ||||| | || ||| | || | | |||||
Sbjct 1818476 ACAGGTAAGACCATTACCCTCGAGGTGGAGTCCTCGGACACCATCAACAATGTCAAGGCC 1818535
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| ||||| ||||| || ||||| || || || || ||||| | || | |||||||||
Sbjct 1818536 AAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAG 1818595
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
|| | || ||| | || |||| || |||||||| || ||||||||||| | ||
Sbjct 1818596 CAGCTCGAGGACGGCCGCACGCTTTCGGACTACAACATCCAGAAGGAGTCGACTCTCCAC 1818655
Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217
| || | ||| |||| ||||| ||
Sbjct 1818656 CTTGTCCTCCGTCTGCGTGGTGGTAT 1818681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434918024882880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |