Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11- 06] 69 sequences; 19,776,778 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 >seq1 Length=2015588 Score = 138 bits (152), Expect = 1e-27 Identities = 365/556 (66%), Gaps = 36/556 (6%) Strand=Plus/Plus Query 34331 ATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAG 34390 |||||||||| |||| || || || || || ||| ||| ||| | | || | | || Sbjct 1719642 ATCTGGGACGGCAACGGATCGCGTGAATTCCTCGACTCGCGCGGGCTGTC-TCACCGCAG 1719700 Query 34391 -GAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCG 34449 || |||||||||||||| |||||||| ||||| ||| |||||||||| || ||||| Sbjct 1719701 AGAAGGCGACTTGGGCCCCGTCTACGGTTTCCAATGGCGACACTTTGGCGCAGAGTACAC 1719760 Query 34450 GGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACAC 34509 | |||| | |||| | || || || | || || || | |||||||||| Sbjct 1719761 AGATTGCGATACCAACTACACCGGTCAAGGCGTCGATCAACTCGCTCAAGTGATCGACAA 1719820 Query 34510 CTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCT 34569 | ||| |||||| ||| | | ||| || | |||| |||||||| ||||| || Sbjct 1719821 GATCAAGAACAACCCTACCGACCGTCGCATCCTGCTCAGCGCCTGGAACCCCAAGGACCT 1719880 Query 34570 CCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAA----- 34623 | ||||||||||| || |||||||||| | ||| || |||| |||| |||| Sbjct 1719881 CGAACTGATGGCGCTGCCGCCGTGCCACA-TGTTTGCGCAGTTCTTCGTCTCGAACCTCG 1719939 Query 34624 -------------TGGGGAG------------CTGTCCTGCCAGCTCTATCAACGATCGG 34658 || ||| || || || || | || || || ||| Sbjct 1719940 ACGCCTACGCCCGCGGCGAGGGCAAAAAGCACCTCTCGTGTCAAATGTACCAGCGTTCGT 1719999 Query 34659 GAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGA 34718 | || | || || || || ||||||||||||||||| ||||||||| | || ||||||| Sbjct 1720000 GCGATCTCGGTTTGGGCGTTCCGTTCAACATTGCTAGCTACGCTCTGTTGACCTACATGA 1720059 Query 34719 TCGCTCATGTCGTGGGGTTG-GTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCAT 34777 |||| || | | | ||| | ||| || |||||| | |||| |||||||| Sbjct 1720060 TCGC-CAAGGTGACCGATTGCGAACCTAAAGAATTGGTGCTCGCCATGGGCGATGCGCAC 1720118 Query 34778 ATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTC 34837 ||||| | | ||| | || | | | | | ||| || | |||| || | || ||| Sbjct 1720119 GTCTACAAGGATCACGTAGAACCGTTGAAGGTGCAGTTGGAGAGAGATCCTCTGCCCTTC 1720178 Query 34838 CCCCAGCTCAAAATTA 34853 ||| ||||||| |||| Sbjct 1720179 CCCAAGCTCAACATTA 1720194 Score = 138 bits (152), Expect = 1e-27 Identities = 365/556 (66%), Gaps = 36/556 (6%) Strand=Plus/Minus Query 6492 TAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGA 6551 |||| ||||||| |||||| || | || |||| | || ||| | | | | | || | Sbjct 1720194 TAATGTTGAGCTTGGGGAAGGGCAGAGGATCTCTCTCCAACTGCACCTTCAACGGTTCTA 1720135 Query 6552 TGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC-CAAC 6610 ||| | | ||||| |||||||| |||| | |||||| || ||| | ||| Sbjct 1720134 CGTGATCCTTGTAGACGTGCGCATCGCCCATGGCGAGCACCAATTCTTTAGGTTCGCAAT 1720075 Query 6611 CCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACC 6670 | | | || ||||||||||| || | ||||||||| ||||||||||||||||| || Sbjct 1720074 CGGTCACCTTG-GCGATCATGTAGGTCAACAGAGCGTAGCTAGCAATGTTGAACGGAACG 1720016 Query 6671 CCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAG------------CTCC 6718 || || || | || | ||| || || || | || || || || ||| Sbjct 1720015 CCCAAACCGAGATCGCACGAACGCTGGTACATTTGACACGAGAGGTGCTTTTTGCCCTCG 1719956 Query 6719 CCA------------------TTCGCGACGTAGAATTG-GCAGAGGGTGTGGCACGGGGG 6759 || |||| |||| |||| || ||| | |||||||||| || Sbjct 1719955 CCGCGGGCGTAGGCGTCGAGGTTCGAGACGAAGAACTGCGCAAACA-TGTGGCACGGCGG 1719897 Query 6760 GAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATC 6819 ||||||||||| ||| ||||| |||||||| |||| | || ||| | | ||| Sbjct 1719896 CAGCGCCATCAGTTCGAGGTCCTTGGGGTTCCAGGCGCTGAGCAGGATGCGACGGTCGGT 1719837 Query 6820 AGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATA 6879 |||||| ||| | |||||||||| | || || || | || || || | || Sbjct 1719836 AGGGTTGTTCTTGATCTTGTCGATCACTTGAGCGAGTTGATCGACGCCTTGACCGGTGTA 1719777 Query 6880 GTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGG 6939 || | |||| | ||||| || |||||||||| ||| ||||| |||||||| || Sbjct 1719776 GTTGGTATCGCAATCTGTGTACTCTGCGCCAAAGTGTCGCCATTGGAAACCGTAGACGGG 1719717 Query 6940 GCCCAAGTCGCCCTC-CTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACC 6998 |||||||||||| || || | | || | | ||| ||| ||| || || || || || | Sbjct 1719716 GCCCAAGTCGCCTTCTCTGCGGTGA-GACAGCCCGCGCGAGTCGAGGAATTCACGCGATC 1719658 Query 6999 CGTGAGCGTCCCAGAT 7014 ||| |||||||||| Sbjct 1719657 CGTTGCCGTCCCAGAT 1719642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262013373680