Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11-
06] 69 sequences; 19,776,778 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq18 150 4e-31
seq11 122 2e-22
seq1 114 3e-20
>seq18
Length=577775
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | ||||| ||||||||||| ||||| || |||| ||||| |||| | |||
Sbjct 203617 CGAAGACGGAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTG 203676
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || |||||||| || || ||||||||||| || || ||||| || || |||
Sbjct 203677 CGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGGATGCCT 203736
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||||||||| ||| || ||||||||||| |||| || || || |
Sbjct 203737 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCGAGG 203796
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| |||||||| || | ||| ||
Sbjct 203797 GTGATGGTCTTGCCGGTGAGAGTCTT 203822
Score = 131 bits (144), Expect = 4e-25
Identities = 153/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | || || | |||||| || || || || |||| |||||| |||| | ||
Sbjct 203388 ACGGAGACGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGAAAGGGT 203447
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || ||||| |||||||| || || || ||||| || || || ||||| || || ||
Sbjct 203448 ACGGCCGTCTTCAAGCTGCTTGCCGGCAAAAATAAGCCGCTGCTGATCGGGTGGGATGCC 203507
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||||||||||||| ||| || ||||||||||| |||| || || || |
Sbjct 203508 TTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCGAG 203567
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| |||||||| |||| ||| ||
Sbjct 203568 AGTGATGGTCTTGCCGGTCAGAGTCTT 203594
Score = 113 bits (124), Expect = 1e-19
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | |||||| || || || || |||| ||||| || | | || || ||
Sbjct 283458 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGTGGCCGTCC 283517
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || || |||||||| || || || ||||||||
Sbjct 283518 TCAAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 283577
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| || | || || || | ||||| |||
Sbjct 283578 TGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGAGTGATGGTC 283637
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| ||||| | || || | ||| | ||||| ||
Sbjct 283638 TTACCCGTGAGGGTCTTAACGAAGATCTGCATCTT 283672
>seq11
Length=758843
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||||||||| | ||| || || || | ||||| |||| | ||| | || ||
Sbjct 158257 AGGACAAGGTGCAACGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCGTCC 158316
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| |||||||| || ||||| || ||||| ||||| ||||| ||||||||
Sbjct 158317 TCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCC 158376
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| ||||| ||||| || | || || || | |||||||||
Sbjct 158377 TGGATCTTGGCTTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGTGTGATCGTC 158436
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | || || | ||| | |||||
Sbjct 158437 TTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 158468
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| |||||||| || || || || |||| |||||||||| | || | || ||
Sbjct 158485 AGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCC 158544
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || || ||||| || || || || || || || ||||| |||||||||
Sbjct 158545 TCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCT 158604
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || ||||| ||||| || | ||||| || | |||||||||
Sbjct 158605 TGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATCGTC 158664
Query 225682 TTGCCCGTCAAAGTTTT 225698
|| || |||| ||| ||
Sbjct 158665 TTACCGGTCAGAGTCTT 158681
Score = 104 bits (114), Expect = 6e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| | ||| || || || | ||||| || | | ||| | |||||
Sbjct 158029 AGGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGACCATCC 158088
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||| | || || |||||||| || ||||| ||||||||
Sbjct 158089 TCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 158148
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || || || || || |||| || || || | ||| || |||
Sbjct 158149 TGGATCTTGGCCTTGACGTTGTCAATAGTATCCGAGGACTCGACATCGAGCGTAATGGTC 158208
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||| | || || | || | ||||||
Sbjct 158209 TTGCCCGTGAGCGTCTTGACAAAGATTTGCAT 158240
>seq1
Length=2015588
Score = 114 bits (126), Expect = 3e-20
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||||||||||||||| || || || |||| ||||| || | | || | || ||
Sbjct 1818663 AGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCGTCC 1818604
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| || || || ||||| || || || || ||||||||
Sbjct 1818603 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1818544
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| ||| | ||||||||| |||| ||||| || | || || |||
Sbjct 1818543 TGAATCTTGGCCTTGACATTGTTGATGGTGTCCGAGGACTCCACCTCGAGGGTAATGGTC 1818484
Query 225682 TTGCCCGT 225689
|| || ||
Sbjct 1818483 TTACCTGT 1818476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530145727886
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |