Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11- 06] 69 sequences; 19,776,778 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1 154 1e-32 >seq1 Length=2015588 Score = 154 bits (170), Expect = 1e-32 Identities = 435/660 (66%), Gaps = 46/660 (7%) Strand=Plus/Minus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 |||| ||||| || || ||||| | ||| ||||| |||||| ||||||||| || Sbjct 1720182 TGGGGAAGGGCAGAGGATCTCTCTCCAACTGCACCTTCAACGGTTCTACGTGATCCTTGT 1720123 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 ||||||| || || |||| || | | || || ||| ||||| |||| || | | Sbjct 1720122 AGACGTGCGCATCGCCCATGGCGAGCACCAATTCTTTAGGTTCGCAATCGGTCACCTTGG 1720063 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||||||| || | |||| |||||| || ||||| || || || || | || | | Sbjct 1720062 CGATCATGTAGGTCAACAGAGCGTAGCTAGCAATGTTGAACGGAACGCCCAAACCGAGAT 1720003 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCT-CT-----CCATCGC------------ 27325 | | ||| | |||||| | ||||||||||| | || || |||| Sbjct 1720002 CGCACGAACGCTGGTACATTTGACACGAGAGGTGCTTTTTGCCCTCGCCGCGGGCGTAGG 1719943 Query 27326 --------TT----ACGTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGA 27370 || ||| | ||||| | | || ||||||||| || || ||||| | Sbjct 1719942 CGTCGAGGTTCGAGACGAAGAACTGCGCAAACAT---GTGGCACGGCGGCAGCGCCATCA 1719886 Query 27371 GGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC 27430 | | | ||| |||||||||||||||| | | |||||| | ||| ||||||||| Sbjct 1719885 GTTCGAGGTCCTTGGGGTTCCAGGCGCTGAGCAGGATGCGACGGTCGGTAGGGTTGTTCT 1719826 Query 27431 TGATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGT--CTACCC 27487 |||| ||| | | || || || ||||| || || || | ||||| || | Sbjct 1719825 TGATCTTGTCGATCAC-TTGAGCGAGTTGATCGACGCCTTGACCGGTGTAGTTGGTA-TC 1719768 Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 || || ||||||||||| || || || | ||||||||| ||||| || || |||| || Sbjct 1719767 GCA-ATCTGTGTACTCTGCGCCAAAGTGTCGCCATTGGAAACCGTAGACGGGGCCCAAGT 1719709 Query 27548 CTCCCTCTTCCCTGTGCTCGA-AGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 27605 | || ||| | ||| || ||||| | | ||| | || || | || |||||| | Sbjct 1719708 CGCCTTCTCTGCGGTG--AGACAGCCCGCGCGAGTCGAGGAATTCACGCGATCCGTTGCC 1719651 Query 27606 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 27665 ||||||||| | ||| ||||| || | |||| ||| || | || || || || Sbjct 1719650 GTCCCAGATGTGTACGCCCTTATCTGTGAGCAGTTTCGAATCGGTCTTGCCAGCAACAAA 1719591 Query 27666 CCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 ||| || |||||||| | ||| | ||||||| | |||||| ||||| || || || Sbjct 1719590 CCAGAGGAGCTCCTCGAGCACGCCACGGAAAAAGACACGCTTGGTGGTGAGCAGAGGCAA 1719531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506889267539