Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11-
06] 69 sequences; 19,776,778 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq1 154 1e-32
>seq1
Length=2015588
Score = 154 bits (170), Expect = 1e-32
Identities = 435/660 (66%), Gaps = 46/660 (7%)
Strand=Plus/Minus
Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163
|||| ||||| || || ||||| | ||| ||||| |||||| ||||||||| ||
Sbjct 1720182 TGGGGAAGGGCAGAGGATCTCTCTCCAACTGCACCTTCAACGGTTCTACGTGATCCTTGT 1720123
Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223
||||||| || || |||| || | | || || ||| ||||| |||| || | |
Sbjct 1720122 AGACGTGCGCATCGCCCATGGCGAGCACCAATTCTTTAGGTTCGCAATCGGTCACCTTGG 1720063
Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283
| |||||||| || | |||| |||||| || ||||| || || || || | || | |
Sbjct 1720062 CGATCATGTAGGTCAACAGAGCGTAGCTAGCAATGTTGAACGGAACGCCCAAACCGAGAT 1720003
Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCT-CT-----CCATCGC------------ 27325
| | ||| | |||||| | ||||||||||| | || || ||||
Sbjct 1720002 CGCACGAACGCTGGTACATTTGACACGAGAGGTGCTTTTTGCCCTCGCCGCGGGCGTAGG 1719943
Query 27326 --------TT----ACGTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGA 27370
|| ||| | ||||| | | || ||||||||| || || ||||| |
Sbjct 1719942 CGTCGAGGTTCGAGACGAAGAACTGCGCAAACAT---GTGGCACGGCGGCAGCGCCATCA 1719886
Query 27371 GGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC 27430
| | | ||| |||||||||||||||| | | |||||| | ||| |||||||||
Sbjct 1719885 GTTCGAGGTCCTTGGGGTTCCAGGCGCTGAGCAGGATGCGACGGTCGGTAGGGTTGTTCT 1719826
Query 27431 TGATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGT--CTACCC 27487
|||| ||| | | || || || ||||| || || || | ||||| || |
Sbjct 1719825 TGATCTTGTCGATCAC-TTGAGCGAGTTGATCGACGCCTTGACCGGTGTAGTTGGTA-TC 1719768
Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547
|| || ||||||||||| || || || | ||||||||| ||||| || || |||| ||
Sbjct 1719767 GCA-ATCTGTGTACTCTGCGCCAAAGTGTCGCCATTGGAAACCGTAGACGGGGCCCAAGT 1719709
Query 27548 CTCCCTCTTCCCTGTGCTCGA-AGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 27605
| || ||| | ||| || ||||| | | ||| | || || | || |||||| |
Sbjct 1719708 CGCCTTCTCTGCGGTG--AGACAGCCCGCGCGAGTCGAGGAATTCACGCGATCCGTTGCC 1719651
Query 27606 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 27665
||||||||| | ||| ||||| || | |||| ||| || | || || || ||
Sbjct 1719650 GTCCCAGATGTGTACGCCCTTATCTGTGAGCAGTTTCGAATCGGTCTTGCCAGCAACAAA 1719591
Query 27666 CCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725
||| || |||||||| | ||| | ||||||| | |||||| ||||| || || ||
Sbjct 1719590 CCAGAGGAGCTCCTCGAGCACGCCACGGAAAAAGACACGCTTGGTGGTGAGCAGAGGCAA 1719531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369506889267539
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |