Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11- 06] 69 sequences; 19,776,778 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq9 100 4e-16 >seq9 Length=823499 Score = 100 bits (110), Expect = 4e-16 Identities = 332/515 (64%), Gaps = 6/515 (1%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || |||||||||||||| || || || || |||||||| || || | ||| Sbjct 593924 TCGTTGGAGAAGGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCG 593983 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || || || ||||| |||||||| ||||| ||||| ||| || | ||| || || Sbjct 593984 AAGGAGCCGGAGAAGAAGATGCCTTCAACGGCGGCAAAGGCGACGAGACGCTCGGCGAAA 594043 Query 48303 CTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 |||| | || | ||||| || | ||||| || || |||| ||| || || Sbjct 594044 GTGGCGCGCTTGTCGCTGATCCATCGCAGCGCCCAGTCGGCTTTCTGCTTGACGACGGGG 594103 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 || || || | || | |||||| | | | | | || || ||| || || Sbjct 594104 ATGGTCTCGACGGCGTCAAAGAGGAGCTCGCGCTGCTCGGGCTCGCGAATGTAGGTGTCG 594163 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 || | || || | || ||||| || || || || ||||| || ||||| || Sbjct 594164 ATGAGGAGCGAGTAGGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAG 594223 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 || | || || | | || ||||| | | || || || | | ||||| || || Sbjct 594224 CAACGAGCCTCGGCGGCTTGCACCTCGGAGCTGAAACGCTCGACGAGGTTCTCGTTGACG 594283 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599 || || || ||| || || || || | || || ||||| | ||||||| Sbjct 594284 ATACCGTCGGAAGCGGCGAAGAAGGCGAGGACGTGCGAGATAAAGTGGCGTTCGTTGTCG 594343 Query 48600 GTCAGTTTATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 48656 | || || || |||||| | || ||| || || | || | ||||| || ||||| Sbjct 594344 TTGAGCTTGTTGTCCCAGTCGTGGAGATCCTTGGAAAGGTCGATCTCTTCGGCGGTCCAG 594403 Query 48657 AATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || || ||||| || ||||| ||||| | ||| || Sbjct 594404 AAGGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 594438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668200848160