Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F000772675.1_202014-11-
06] 69 sequences; 19,776,778 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq18 116 9e-21
seq11 107 4e-18
seq1 89.7 1e-12
>seq18
Length=577775
Score = 116 bits (128), Expect = 9e-21
Identities = 156/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || || ||||| || || || ||||||||||| |||| | ||| | || ||
Sbjct 203625 GAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTC 203684
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
|| || ||||| || || |||||||| | |||||| || | | ||| ||||||||
Sbjct 203685 CTCGAGCTGCTTT--CCTGCAAAGATAAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTG 203742
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
||||| || || ||||| | || | | |||| || ||| || || || || ||
Sbjct 203743 TCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATG 203802
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| ||||||||||| || |||| ||||||
Sbjct 203803 GTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 203837
Score = 102 bits (112), Expect = 2e-16
Identities = 150/211 (71%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||| || ||||||||||| || | | || || || || |
Sbjct 283463 CAAG-TGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGTGGCCGTCCTCAA 283521
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || |||||||| || | ||||||||| | | ||| || ||||| || || |
Sbjct 283522 GCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGA 283581
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| | || | | |||| ||| ||| || || ||||| || || || |
Sbjct 283582 TCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTAC 283641
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||||||| ||||| ||||||| |||||| ||
Sbjct 283642 CCGTGAGGGTCTTAACGAAGATCTGCATCTT 283672
>seq11
Length=758843
Score = 107 bits (118), Expect = 4e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| || || || || ||||| || |||||||||||||||| | || |
Sbjct 158478 GAGACGGAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCG 158537
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| || || || || ||||| ||||| || | |||||| || | | ||| || ||
Sbjct 158538 GCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGTGGGATACCCTC 158597
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| |||||||| || ||||| | || | |||| ||| ||| || || || ||
Sbjct 158598 CTTGTCTTGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGT 158657
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || |||||||| || |||| ||||||
Sbjct 158658 GATCGTCTTACCGGTCAGAGTCTTGACAAAGATCTGCAT 158696
>seq1
Length=2015588
Score = 89.7 bits (98), Expect = 1e-12
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||||||||| || ||||| ||||| || ||||||||||| || | | || | || ||
Sbjct 1818664 GAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCGTC 1818605
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || ||||||||||| || | ||||||||| | | ||| || ||||| ||
Sbjct 1818604 CTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1818545
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||| || |||||| | | | | |||| || ||| || || || ||||| ||
Sbjct 1818544 CTGAATCTTGGCCTTGACATTGTTGATGGTGTCCGAGGACTCCACCTCGAGGGTAATGGT 1818485
Query 152072 TTTGCCCGT 152080
|| || ||
Sbjct 1818484 CTTACCTGT 1818476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153819779950299
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |