Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq11 111 1e-19
seq17 104 2e-17
seq1 89.7 4e-13
>seq11
Length=790822
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004
||| || || ||||| | ||| || | ||||| ||| |||||| |||||||| |||||
Sbjct 632196 GTTACCGCCACGCAGACGGAGGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTC 632137
Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064
|| || || | | ||||||||||| || || ||| | || | | |||||||||
Sbjct 632136 CGAAAGAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCGGG 632077
Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124
|| | || |||||||| |||||| || || | | | | |||||| || |||
Sbjct 632076 AGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTATCCGAGGACTC 632017
Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | |||||||||||||| || | ||| |||||||| ||||||||
Sbjct 632016 GACATCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTGACAAAGATTTGCAT 631966
>seq17
Length=605135
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| |||||||| || ||||| ||||| | || || || ||||||| ||||| || ||
Sbjct 221975 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCT 222034
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | ||||||| |||||| || || | |||||||||||| |||||| ||
Sbjct 222035 GCAAAGATAAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 222094
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | ||| || ||| || ||| || | ||| |||||||||||||| | ||
Sbjct 222095 ACGTTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTC 222154
Query 21159 TTGACAAATATTTGCAT 21175
|| ||||| || |||||
Sbjct 222155 TTAACAAAGATCTGCAT 222171
>seq1
Length=2009762
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | ||| || | || | ||| |||||||| || ||||| |||||||
Sbjct 1808607 CCACCACGCAGACGGAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1808548
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || ||||||| ||||| ||||| || | || || | ||||||||| |||
Sbjct 1808547 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 1808488
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||||| || || | | || || || || ||||
Sbjct 1808487 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTTGATGGTGTCCGAGGACTCCACC 1808428
Query 21129 TCCACGGTAATGGTCTTGCCGGTT 21152
|| | |||||||||||| || |||
Sbjct 1808427 TCGAGGGTAATGGTCTTACCTGTT 1808404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422259061050332
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |