Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq11 140 4e-28 seq17 111 2e-19 >seq11 Length=790822 Score = 140 bits (154), Expect = 4e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 ||||| ||||||||||| ||||| ||||| || | ||||| || | || || |||||| Sbjct 632168 TGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGACCATCCTCCAGCTGC 632109 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 |||||||| || || | ||||||||||||| || | | |||||||||| ||| || Sbjct 632108 TTACCAGCAAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTG 632049 Query 43101 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 |||| ||| | | | || || || || ||||||| ||| ||||| |||||||| Sbjct 632048 GCCTTGA-CGTTGTCAATAGTATCCGAGGACTCGACATCGAGCGTAATGGTCTTGCCCGT 631990 Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| |||||||||||||| Sbjct 631989 GAGCGTCTTGACAAAGATTTGCAT 631966 Score = 132 bits (146), Expect = 6e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 ||||| ||||||||||| ||||| ||||| || | ||||| || |||| || |||||| Sbjct 631940 TGCAACGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCGTCCTCGAGCTGC 631881 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 ||||||||||| ||||||||||||||||| | ||| | | |||||||||| ||| || Sbjct 631880 TTACCAGCGAAAATGAGTCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATCTTG 631821 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 ||| | | | | |||||| || || || || | ||||| || || || || Sbjct 631820 GCTTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGTGTGATCGTCTTTCCTGTG 631761 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || || || ||||| Sbjct 631760 AGCGTCTTGACGAAAATCTGCAT 631738 >seq17 Length=605135 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||| ||||| || | || |||||| || || ||||| || | Sbjct 221945 CCTCCACGGAGACGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 222004 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || |||||||| || || || || ||||||||||| |||| || Sbjct 222005 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGG 222064 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||| ||| || |||| ||| | | | ||||| || || || Sbjct 222065 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGGACTCGAC 222123 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 222124 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 222171 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | || |||||| || || ||||| || | || || | |||| || Sbjct 300032 CACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGTGGCCGTCCTC 300091 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||||||||||||||| || || ||||||||||||| || | || |||||||||| Sbjct 300092 AAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 300151 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || |||| | | | ||||| || || || |||| |||||||| || Sbjct 300152 GATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTT 300211 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||| || ||||| || ||||| ||||| || Sbjct 300212 ACCCGTGAGGGTCTTAACGAAGATCTGCATCTT 300244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817407011560