Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq11 132 3e-26 seq17 116 2e-21 seq1 89.7 3e-13 >seq11 Length=790822 Score = 132 bits (146), Expect = 3e-26 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||||| | || || ||||| || || || || ||||| |||||||||||||| Sbjct 631964 CCTCCGCGCAATCGAAGGACAAGGTGCAACGTGCTCTCCTTCTGAATGTTGTAGTCGGAG 631905 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || |||| |||| || | |||||| || ||||||||||| ||||||||||| | |||| Sbjct 631904 AGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCAGGCGGG 631845 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||||||||| ||| || ||||| | || | | |||| || | || |||| Sbjct 631844 -ATACCCTCCTTGTCCTGGATC-TTGGCTTTCACATTGTCGATCGTGTCCGAAGACTCGA 631787 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||||| || || || ||||| || || || || |||||||| Sbjct 631786 CCTCCAGTGTGATCGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 631738 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | || || ||||| || || || || ||||| ||||||||||| || Sbjct 632192 CCGCCACGCAGACGGAGGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGAA 632133 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || || || || | |||||||||||| || Sbjct 632132 AGAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGAGGG 632073 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | ||| | || ||||| Sbjct 632072 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTATCCGAGGACTCGACA 632013 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| ||||| ||||| ||||| || || |||||||| ||||| Sbjct 632012 TCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTGACAAAGATTTGCAT 631966 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| |||||||| ||||| || ||| |||| Sbjct 631721 AGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCC 631662 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || ||||| |||||||| || || | | ||||||||| Sbjct 631661 TCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCT 631602 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || || || || | ||||| || Sbjct 631601 TGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATCGTC 631542 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| ||||| || |||||||||||||| Sbjct 631541 TTACCGGTCAGAGTCTTGACAAAGATCTGCAT 631510 >seq17 Length=605135 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || ||| |||| || | |||||| ||||| || Sbjct 221981 TCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCAAAG 222040 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || |||||||| ||| || | || |||||||| ||||| ||| | | | Sbjct 222041 ATAAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTG 222100 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || ||||| || | |||||||| |||||||||||||| || ||| Sbjct 222101 TCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACA 222160 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 222161 AAGATCTGCATC 222172 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | || || ||||| ||||||||||| || Sbjct 300015 CCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 300074 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||| || ||||| || || |||||||||||| ||| Sbjct 300075 AGGGTGTGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 300134 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | || | || ||||| Sbjct 300135 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACC 300194 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| || || ||||| || || || |||||||||||| Sbjct 300195 TCGAGAGTGATGGTCTTACCCGTGAGGGTCTTAACGAAGATCTGCATC 300242 >seq1 Length=2009762 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| | ||| || ||||| ||||||||||| || Sbjct 1808607 CCACCACGCAGACGGAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1808548 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | ||||||||| ||||| || || ||||||||||| ||| Sbjct 1808547 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 1808488 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 1808487 ATGCCCTCCTTGTC 1808474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071893689120