Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq19 181 2e-40 >seq19 Length=580969 Score = 181 bits (200), Expect = 2e-40 Identities = 781/1205 (65%), Gaps = 41/1205 (3%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | ||||| | ||||| ||||| ||| || || |||||| || | |||||| Sbjct 521047 TACAACTTCTTCGGCTTCAAGACGCTCGAGCGCTCCTACCTCCTCCGCATCAACGGCAAG 520988 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||| || || ||||||||| | ||||| || || ||||| || ||| | ||| Sbjct 520987 GTCGCAGAGCGTCCCCAGCACATGCTCATGCGTGTCGCCGTCGGTATCCACGGCCAGGAC 520928 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || ||||||| | ||||| |||| | ||| || | | ||||| ||| | Sbjct 520927 ATCGAGAGCGCCATTGAGACCTACAACCTCATGTCGCAAAAGTACTTTACACACGCCTCC 520868 Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCC 249057 || || ||||||||||| |||||| || |||||| |||||||| || | || Sbjct 520867 CCCACCCTCTTCAACGCAGGTACCCCGCACCCTCAGCTCTCGTCGTGCTTCCTCGTCACC 520808 Query 249058 ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATT 249114 ||| | |||||||| |||| ||||| || |||||||| | ||||| || | ||| Sbjct 520807 ATGAAGGACGACTCGATCGATGGCATCTACGACACGCTCA---AGACGTGTGCCATGATC 520751 Query 249115 TCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTAC 249174 || || ||| || || ||||| ||| | || | |||||| | | ||||| ||| Sbjct 520750 TCCAAGACCGCCGGTGGTATCGGCCTCAACATCCACTGCATCCGCGGCACCGGTTCCTAC 520691 Query 249175 ATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCC 249234 || ||||| || || ||||| | |||||||| ||| | || || ||| | | Sbjct 520690 ATTGCCGGTACCAACGGTGTCAGCAACGGTATCGTGCCCATGCTCCGCGTCTTCAACAAC 520631 Query 249235 ACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTG 249291 |||||| | | | || |||||| || | || || | || ||||| || | Sbjct 520630 ACCGCCCGCTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATTTACGTT 520571 Query 249292 GAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAG 249351 || |||||| | || | || |||||||| ||| | |||||| ||||||| ||| Sbjct 520570 GAGCCATGGCACTCGGACGTCTTTGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAG 520511 Query 249352 CTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGC 249411 || | || || || |||||||||| || ||||| |||| | |||||| | Sbjct 520510 GAGGTGCGTGCCCGAGAGCTCTTCTACGCACTCTGGGTGCCCGATCTCTTCATGAAGAGG 520451 Query 249412 GTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CGCCCCGGACCTCATCGA 249470 ||| || ||||||| ||| |||| | | || ||| ||||||| |||| || Sbjct 520450 GTCGAGCAGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCCGG-CCTCGCTGA 520392 Query 249471 TCTAC-ACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAATCCAACGGCATCGG 249527 || | |||||| ||| || || | |||| || || ||||| || | ||| | Sbjct 520391 -CTGCTACGGCGACGAGTTTGAGC--GCCTCTACGAGCGCTACGAGGCCGAGGGCCGTGC 520335 Query 249528 CAAG---ACAATCAAGGCTCGGACCCT-TTTTGCGAAGGTGGTGGAGTCCCAGATAGAGA 249583 |||| || ||||||| | || || | | || | | ||||| |||| |||| Sbjct 520334 CAAGCGCACCGTCAAGGCCCAGAAGCTCTGGTACG-CCATCCTCGAGTCGCAGACCGAGA 520276 Query 249584 CAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCAT 249642 | || || | | || | | ||| || || ||| |||||| ||||| | | Sbjct 520275 CCGGCAACCCCT-TCATCCTCTACAAGGATGCCGCTAACCGCAAGAGCAACCAGAAGAAC 520217 Query 249643 CTTGGTACCATCCGCTCGTCAAATCTCTGTGCA--GAGGTGATTCAATACTCGTCCAAGG 249700 || || |||||| | || || || |||||| ||| | || | ||| || | Sbjct 520216 CTCGGCACCATCAAGTGCTCCAA-CT-TGTGCACCGAGATTATCGAGTACAGCGCCCCCG 520159 Query 249701 AGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGAGGCACGT-GAGGGCG--G 249757 | ||| | || ||||||||| |||| ||| ||| | | | || || | Sbjct 520158 ACGAGGTGGCTGTCTGCAACTTGGCCTCGATCGCCCTCCCCACCTTCATCGACCCCGTCG 520099 Query 249758 ACAGGACGTTCGACTTCGAGCGTCTTCACCGGACGGCGAAACAGGCGAT---CAAAAACC 249814 || ||||| ||||||| | ||||| ||| || | || | |||| || ||| |||| Sbjct 520098 CCAAGACGTACGACTTCAAACGTCTGCAC--GAGGTCGCCA-AGGCCATCTGCAAGAACC 520042 Query 249815 TCAACAAGGTGATTGATGTCAATTTTTACCCCCTTGAGGAATGCAGGTTG-TCCAACATG 249873 | |||||| | || || |||| | |||||| | |||| | || || | ||||||||| Sbjct 520041 TTAACAAGATCATCGACATCAACTACTACCCCGTCGAGG-AGGCCCGTCGATCCAACATG 519983 Query 249874 AAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACATGGTGATGGGA 249933 |||||||| || | || || |||| || ||||| || |||| | ||||| Sbjct 519982 CGCCACCGTCCCATCGGTATCGGTGTCCAGGGTCTTGCCGACGCCTTCATGATCATGGGC 519923 Query 249934 TTCCCCTTCGAGTCAGAGGAGGCAGCGACG-CTAAATAAACAGATTTTCGAGACCATCTA 249992 | | |||| ||||| ||||| || || || || || || |||||||||||||| Sbjct 519922 TACGCCTTTGAGTCTCCCGAGGC-TCGTCGTCTCAACGTGCATATCTTCGAGACCATCTA 519864 Query 249993 TCACG 249997 |||| Sbjct 519863 CCACG 519859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766028543936