Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq19 343 1e-89
seq8 197 1e-45
seq11 100 3e-16
seq17 84.2 2e-11
>seq19
Length=580969
Score = 343 bits (380), Expect = 1e-89
Identities = 655/961 (68%), Gaps = 8/961 (1%)
Strand=Plus/Plus
Query 23017 GACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAAT 23076
|| |||||||||||| | ||||| || ||||||||||| || ||||||| | |||
Sbjct 520121 GAGGGCGATCGAGGCCAAGTTGCAGACAGCCACCTCGTCGGGGGCGCTGTACTCGATAAT 520180
Query 23077 TTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATT 23136
||||| || | ||| ||||| || ||||| | || |||||||||| || || ||
Sbjct 520181 CTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTT 520240
Query 23137 GCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGC 23196
| |||||||||||| ||| | || |||| |||||| ||||||||||| ||| ||
Sbjct 520241 AGCGGCATCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCGGTCTGCGACTCGAGGATGGC 520300
Query 23197 TCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTG 23256
||| | |||| || | || ||| | | ||| || ||||||| |
Sbjct 520301 GTACCAGAGCTTCTGGGCCTTGACGGTGCGCTTGGCACGGCCCTCGGCCTCGTAGCGCTC 520360
Query 23257 GTACAACGCG-TCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGAC 23315
||| | ||| ||||| ||| | ||||| ||||| || |||||||| | | | || |
Sbjct 520361 GTAGAG-GCGCTCAAACTCGTCGCCGTAGCAGTCAGCGAGGCCGGGGCACTCGTTGGGGC 520419
Query 23316 ACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATA 23375
||||||| ||| || | || || | |||| || ||||| || | ||| |
Sbjct 520420 ACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCGGGCACCCAGA 520479
Query 23376 GAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCA 23435
| |||||||| || || ||||| ||||||||||| |||||| |||||| | || |
Sbjct 520480 GTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGA 520539
Query 23436 AAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
|| || || ||||||| ||||| ||||| | ||||| |||||| || || || | ||
Sbjct 520540 GGAACTCAAAGACGTCCGAGTGCCATGGCTCAACGTAAATGGCAAAGGCACCGGGACGCT 520599
Query 23496 TATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGA 23555
| ||||| ||||| |||||||| ||||| ||||||||| | || | ||||| |||||||
Sbjct 520600 TGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGCACGA 520659
Query 23556 GACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAA 23615
||||||| | ||| || || | ||||| | | || | | ||| |
Sbjct 520660 TACCGTTGCTGACACCGTTGGTACCGGCAATGTAGGAACCGGTGCCGCGGATGCAGTGGA 520719
Query 23616 CGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGT 23675
|| || || || || ||| | | || || ||||| || || || || |||||||
Sbjct 520720 TGTTGAGGCCGATACCACCGGCGGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGT 520779
Query 23676 AGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTT 23735
||||||| ||||| ||| || || | | ||| | ||| ||||| || | || | |
Sbjct 520780 AGATGCCATCGATCGAGTCGTCCTTCATGGTGACGAGGAAGCACGACGAGAGCTGAGGGT 520839
Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795
|| ||| | || ||| || || ||| |||||| |||||||| | |||||| |
Sbjct 520840 GCGGGGTACCTGCGTTGAAGAGGGTGGGGGAGGCGTGTGTAAAGTACTTTTGCGACATGA 520899
Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855
| ||||| || || |||||| || ||||||| ||||| ||||||| |||||| ||||
Sbjct 520900 GGTTGTAGGTCTCAATGGCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACACGCA 520959
Query 23856 TCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAAC 23912
| | ||||| || || | || ||||| | |||||| || || || || || |
Sbjct 520960 TGAGCATGTGCTGGGGACGCTCTGCGACCTT---GCCGTTGATGCGGAGGAGGTAGGAGC 521016
Query 23913 GTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCG 23972
| | | ||| || || || || ||| |||| ||||| || |||| | |||||||
Sbjct 521017 GCTCGAGCGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCG 521076
Query 23973 A 23973
|
Sbjct 521077 A 521077
>seq8
Length=837966
Score = 197 bits (218), Expect = 1e-45
Identities = 391/570 (69%), Gaps = 23/570 (4%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||||||||| || || || || ||||||| |||||| | |||||
Sbjct 244374 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATCGACCTT 244433
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| |||||||| ||| ||||| | ||||| || || | | |||||
Sbjct 244434 TCCAAGGATCTCCACGACTGGGACAACAAGCTCAACGACAACGAACGCCACTTTATCTCG 244493
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || |||||||| ||||| ||||| || |||||||| | ||||| |
Sbjct 244494 CACGTCCTCGCCTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTCGTCGAGCG- 244552
Query 57747 TTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804
||||| || ||||||| | ||||| | ||||| ||||| || || | |
Sbjct 244553 -TTTCAGCTCCGAGGTGCAAGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGA 244611
Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864
| || ||| | || || || | || ||||| |||||||| || ||| | || ||
Sbjct 244612 TGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACCTACATTCGCGAGCCCG 244671
Query 57865 ACGAGAAACGTAGA--CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAG-- 57920
| || || || || || |||| |||| || || |||| ||| |||| ||
Sbjct 244672 AGCAGCG-CG-AGCTCCTCTTTGACGCCGTCGAGACCATCCCCG---TCGTCAAGCAGAA 244726
Query 57921 -GCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG---GCCACGTTCGCCGAGAGGCT 57976
|| || ||| | | |||||| | ||| || | ||||| ||||||||| | ||
Sbjct 244727 AGCCGACTGGGCGCTGCGATGGATCA---GCGACAAGCGCGCCACTTTCGCCGAGCGTCT 244783
Query 57977 AATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTG 58036
|||| || |||||||| ||||| || ||||| || ||| ||| || | || || ||
Sbjct 244784 CGTCGCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTG 244843
Query 58037 GATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGA 58096
| | ||||| ||||| || |||||||| || || || ||||||| | || ||||||||
Sbjct 244844 GCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCGCGCGA 244903
Query 58097 CGAGGGTCTCCATACTGATTTTGCGTGCCT 58126
||| ||||| || || || ||||| |||||
Sbjct 244904 CGAAGGTCTGCACACCGACTTTGCCTGCCT 244933
>seq11
Length=790822
Score = 100 bits (110), Expect = 3e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||||||||| || || ||||||||| |||| || || | ||
Sbjct 631509 CATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACGATCACCCTCGAGGTGGAGTCTTC 631568
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| | |||| | ||||| | || |||||||| || | || || || ||
Sbjct 631569 CGACACTATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCTGATCA 631628
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||||| || || || ||||| ||| | || ||| || | |||||| ||
Sbjct 631629 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTTTCCGATTACAA 631688
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || ||||| || || ||||| ||
Sbjct 631689 CATCCAGAAGGAGTCGACCCTCCACCTGGTCCT 631721
Score = 89.7 bits (98), Expect = 5e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||| || ||||| || |||||||| | || || || | ||
Sbjct 631738 ATGCAGATTTTCGTCAAGACGCTCACAGGAAAGACGATCACACTGGAGGTCGAGTCTTCG 631797
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || ||| | || ||||||||| || | ||||| ||||||
Sbjct 631798 GACACGATCGACAATGTGAAAGCCAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 631857
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || |||||||| || ||| | || ||| ||| | ||| || |||
Sbjct 631858 CAGCGACTCATTTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTCTCCGACTACAAC 631917
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || || | || || || ||| || || | || ||||
Sbjct 631918 ATTCAGAAGGAGAGCACGTTGCACCTTGTCCTTCGATTGCGCGGAGGTA 631966
>seq17
Length=605135
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || |||||||| || ||||| || |||||| |||| || || | ||
Sbjct 222171 ATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 222112
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || |||||||||||| | || ||||| |||
Sbjct 222111 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGATCAG 222052
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || || || || || ||| | || ||| ||| | ||| || |||
Sbjct 222051 CAGCGACTTATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 221992
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401
|| || || || ||||| || || ||||
Sbjct 221991 ATCCAGAAGGAGTCGACGCTCCACTTGGT 221963
Score = 84.2 bits (92), Expect = 2e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| ||||| || || || || || ||||| |||| || || |
Sbjct 300244 AAGATGCAGATCTTCGTTAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTCGAGTCT 300185
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| |||| | ||||| | || ||||||||| ||| | || ||||||
Sbjct 300184 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 300125
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
|||||||| || || |||||||| || ||| | || |||
Sbjct 300124 CAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTTGAGGAC 300086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766249553840
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