Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq19 111 2e-19
>seq19
Length=580969
Score = 111 bits (122), Expect = 2e-19
Identities = 435/679 (64%), Gaps = 4/679 (1%)
Strand=Plus/Plus
Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293
|| ||||| | |||||| || |||| | || || | ||||| |||||||| || | |
Sbjct 520416 GGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCGGGCACC 520475
Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353
|| || || || || |||| | | ||||| || || ||||| ||
Sbjct 520476 CAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 520535
Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413
||||||||| | | | || || ||||| || || | ||| ||||| | | || ||
Sbjct 520536 TCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAACGTAAATGGCAAAGGCACCGGGA 520595
Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473
|| ||||| || ||||| || | ||| | |||||||| || | || | | ||| ||
Sbjct 520596 CGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGC 520655
Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533
| |||||||| | ||| |||||||||| || ||| || || | || || |
Sbjct 520656 ACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAGGAACCGGTGCCGCGGATGC-A 520714
Query 63534 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CG 63591
| || | || || || || || || | || ||||| | || || ||| || | ||
Sbjct 520715 GTGGATGTTGAGGCCGATACCACCGGCGGTCTTGGAGATCATGGCACA-CGTCTTGAGCG 520773
Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651
|||| |||||||| || || || || ||||| | | || || || || | |
Sbjct 520774 TGTCGTAGATGCCATCGATCGAGTCGTCCTTCATGGTGACGAGGAAGCACGACGAGAGCT 520833
Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711
| | | | || || || || || | ||| || || ||||| ||||| | |||| |
Sbjct 520834 GAGGGTGCGGGGTACCTGCGTTGAAGAGGGTGGGGGAGGCGTGTGTAAAGTACTTTTGCG 520893
Query 63712 AAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGA 63771
| | || ||||| |||||||| || || || ||| || || || || ||||
Sbjct 520894 ACATGAGGTTGTAGGTCTCAATGGCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGA 520953
Query 63772 CACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGG 63831
||||||| | ||||||||| || | || | | ||| ||| || | | |||||
Sbjct 520954 CACGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGGAGGTAGG 521013
Query 63832 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 63891
| || | || || || || || ||||||| ||||| || ||||| || ||
Sbjct 521014 AGCGCTCGAGCGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGG 521073
Query 63892 CCGAATTGAGCTTATCCTT 63910
|||| | ||||| |||||
Sbjct 521074 CCGAGTCGAGCTGGTCCTT 521092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817387436560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |