Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq8 95.1 9e-15 seq12 91.5 1e-13 >seq8 Length=837966 Score = 95.1 bits (104), Expect = 9e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 |||||| | |||||||| || ||||||||| || | || || || || || || |||| Sbjct 244779 CGTCTCGTCGCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCCTTCGCCTCCATC 244838 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||||| ||||| || |||||||| || | | || ||||||||| | || Sbjct 244839 TTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCG 244898 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 || ||||||||||| ||| |||||||| || Sbjct 244899 CGCGACGAAGGTCTGCACACCGACTTTGCCTG 244930 >seq12 Length=716888 Score = 91.5 bits (100), Expect = 1e-13 Identities = 120/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 33554 TGCGCAAGATACGCATACCAGAGATGGGCGACAAGTTTGCATCGTTC-ACGGCCCAGAAG 33612 ||||||| | || | || ||| ||||||||||||||| ||| | |||| | ||||| Sbjct 602007 TGCGCAACACGCGTGTGCCGCAGACGGGCGACAAGTTTGCCTCGCGCCACGGTC-AGAAG 601949 Query 33613 GGCACGTGCGGCATGATGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTC 33672 || ||| ||| || | |||| ||| ||||||||||||| |||| || || | Sbjct 601948 GGTACGATCGGTATCACGTACAGGCAGGAGGACATGCCGTTCTCGGCGGAAGGAATTACG 601889 Query 33673 CCGGACCTAGTCATCAACCCGCATGCGTTCCCCTCGCGCATGAC 33716 |||||| | ||||||||||||| || | || ||||| ||||| Sbjct 601888 CCGGACATTATCATCAACCCGCACGCCATTCCGTCGCGAATGAC 601845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356233482776881