Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq17 113 4e-20 seq8 82.4 8e-11 >seq17 Length=605135 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||||||| ||||| | ||| ||||| || || ||||| || ||| Sbjct 221945 CCTCCACGGAGACGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 222004 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| |||||||| || || ||| |||| || || ||||||||||| || Sbjct 222005 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGG 222064 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || || | | || | ||||| | || ||| ||| Sbjct 222065 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACC 222124 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||| | || || || || || ||||| Sbjct 222125 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 222171 >seq8 Length=837966 Score = 82.4 bits (90), Expect = 8e-11 Identities = 143/204 (70%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 52573 GATTGGGCATTGAAATGGATCGAAAACGACAAA---GCCACTTTTGCCGAACGTCTGGTC 52629 || ||||| || ||||||| | |||||| |||||||| ||||| ||||| ||| Sbjct 244731 GACTGGGCGCTGCGATGGATC---AGCGACAAGCGCGCCACTTTCGCCGAGCGTCTCGTC 244787 Query 52630 GCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATC 52689 || ||||| || ||||| | || || || || || || | || || | || Sbjct 244788 GCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTC 244847 Query 52690 AA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGA 52748 || || | || | | |||||||| ||||| || ||||||| | || ||||||||||| Sbjct 244848 AAGAAGCGCGGTC-TCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGA 244906 Query 52749 AGGAATGCACACAGATTTTGCGTG 52772 ||| ||||||| || ||||| || Sbjct 244907 AGGTCTGCACACCGACTTTGCCTG 244930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063832578400