Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq17 113 4e-20
seq8 82.4 8e-11
>seq17
Length=605135
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||||||||| ||||| | ||| ||||| || || ||||| || |||
Sbjct 221945 CCTCCACGGAGACGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 222004
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||| |||||||| || || ||| |||| || || ||||||||||| ||
Sbjct 222005 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGG 222064
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|||||||| ||||| ||| || || | | || | ||||| | || ||| |||
Sbjct 222065 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACC 222124
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | ||||||||||| | || || || || || |||||
Sbjct 222125 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 222171
>seq8
Length=837966
Score = 82.4 bits (90), Expect = 8e-11
Identities = 143/204 (70%), Gaps = 8/204 (4%)
Strand=Plus/Plus
Query 52573 GATTGGGCATTGAAATGGATCGAAAACGACAAA---GCCACTTTTGCCGAACGTCTGGTC 52629
|| ||||| || ||||||| | |||||| |||||||| ||||| ||||| |||
Sbjct 244731 GACTGGGCGCTGCGATGGATC---AGCGACAAGCGCGCCACTTTCGCCGAGCGTCTCGTC 244787
Query 52630 GCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATC 52689
|| ||||| || ||||| | || || || || || || | || || | ||
Sbjct 244788 GCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTC 244847
Query 52690 AA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGA 52748
|| || | || | | |||||||| ||||| || ||||||| | || |||||||||||
Sbjct 244848 AAGAAGCGCGGTC-TCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGA 244906
Query 52749 AGGAATGCACACAGATTTTGCGTG 52772
||| ||||||| || ||||| ||
Sbjct 244907 AGGTCTGCACACCGACTTTGCCTG 244930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496063832578400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |