Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq8 138 2e-27 >seq8 Length=837966 Score = 138 bits (152), Expect = 2e-27 Identities = 376/571 (66%), Gaps = 16/571 (3%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||||||||| ||||| | || || |||||||| || ||||| Sbjct 244930 CAGGCAAAGTCGGTGTGCAGACCTTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGA 244871 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || || ||||| || ||||| || ||||| || || || || || |||||| Sbjct 244870 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAG 244811 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGT 50136 || ||||| || ||||||||||| || || | ||| | || |||||| |||| Sbjct 244810 ATGCCTTCAACGGCGGCAAAGGCGACGAGACGCTCGGCGAAAGTGGCGCGCTTGTCGCTG 244751 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| | ||||| ||||| |||| || || || || || || | ||| | | Sbjct 244750 ATCCATCGCAGCGCCCAGTCGGCTTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCA 244691 Query 50197 AAGAGATAGtttttttCATTACT----ATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| || | | | || || || || || ||||| | || || Sbjct 244690 AAGAG-GAG---CTCGCGCTGCTCGGGCTCGCGAATGTAGGTGTCGATGAGGAGCGAGTA 244635 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 | ||||| || ||||| || || ||||| || |||||||| || | |||||||| Sbjct 244634 GGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGC 244575 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 ||||| || | | || || || | | || || || || || ||||| || Sbjct 244574 GGCTTGCACCTCGGAGCTGAAACGCTCGACGAGGTTCTCGTTGACGATACCGTCGGAAGC 244515 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT--- 50429 || || || || | || || ||||| || ||||||| | || || || Sbjct 244514 GGCGAAGAAGGCGAGGACGTGCGAGATAAAGTGGCGTTCGTTGTCGTTGAGCTTGTTGTC 244455 Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 ||| || | || ||| || || | || | ||||| | ||||| || || ||||| || Sbjct 244454 CCAGTCGTGGAGATCCTTGGAAAGGTCGATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGC 244395 Query 50490 CTTTTTATACATATTCCAGA--TGTCATGAT 50518 |||||| ||||| | ||||| ||| ||||| Sbjct 244394 CTTTTTGTACATTTGCCAGATCTGTGATGAT 244364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268557584280