Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq19 105 9e-18 >seq19 Length=580969 Score = 105 bits (116), Expect = 9e-18 Identities = 443/695 (64%), Gaps = 6/695 (1%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || || ||||| | ||||| || || | | | || | ||||| Sbjct 520401 CCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATG 520460 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| || | ||| || || || || |||| || | |||||| || || Sbjct 520461 AAGAGATCGGGCACCCAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTGCCG 520520 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| || ||||||||| | | | || || ||||| || || | ||| ||| Sbjct 520521 TGGTTCTTGCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAACGTAAATG 520580 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || ||||| || | ||| | |||||||| || | Sbjct 520581 GCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAG 520640 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| || | ||||| ||| |||| ||||| |||| || ||| || Sbjct 520641 ACGCGGAGCATGGGCACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAGGAACCG 520700 Query 72274 CTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 || | || || | || |||| | || || || || || | || ||||| | | Sbjct 520701 GTGCCGCGGATGCAGTGGATGTTGA--GGCCGATACCACCGGCGGTCTTGGAGATCATGG 520758 Query 72332 CGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 | || ||| || | ||| || |||||||| || || || ||| ||||| | | || Sbjct 520759 CACA-CGTCTTGAGCGTGTCGTAGATGCCATCGATCGAGTCGTCCTTCATGGTGACGAGG 520817 Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 || || || | || | | || || || || || | ||| || || ||||| Sbjct 520818 AAGCACGACGAGAGCTGAGGGTGCGGGGTACCTGCGTTGAAGAGGGTGGGGGAGGCGTGT 520877 Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 72510 ||||| | |||| |||| || ||||| |||||||| || || || ||| Sbjct 520878 GTAAAGTACTTTTGCGACATGAGGTTGTAGGTCTCAATGGCGCTCTCGATGTCCTGGCCG 520937 Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 || || || || ||||||||||| | ||| ||||| || | || ||| |||| || Sbjct 520938 TGGATACCGACGGCGACACGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTG 520997 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 72630 || | | |||||| || | || || || || || ||||||| ||||| Sbjct 520998 ATGCGGAGGAGGTAGGAGCGCTCGAGCGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCG 521057 Query 72631 CGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 || ||||| || || |||| | ||| | ||||| Sbjct 521058 CGCTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 521092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138973490520