Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq17 86.0 6e-12
seq8 84.2 2e-11
>seq17
Length=605135
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| || | ||||||||| || || | || || || || || |||||||| |||
Sbjct 221945 CCTCCACGGAGACGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 222004
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| ||| ||||| || || || ||| |||| || || ||||||||||| ||
Sbjct 222005 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGG 222064
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||| ||||| || || || | | || | ||||| | || || ||
Sbjct 222065 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACC 222124
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | ||||||||||| | || || || || || |||||
Sbjct 222125 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 222171
>seq8
Length=837966
Score = 84.2 bits (92), Expect = 2e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 50404 ACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGC 50463
||||| ||||| ||| | || || |||||| |||||||| | || || ||||| |
Sbjct 244767 ACTTTCGCCGAGCGTCTCGTCGCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCC 244826
Query 50464 TTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAAC 50523
|| || |||| || | | || | || | |||||||| ||||| || ||||
Sbjct 244827 TTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAAC 244886
Query 50524 GAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTG 50567
||| | || |||||||||||||| ||||||| |||||||| ||
Sbjct 244887 GAGCTCATCTCGCGCGACGAAGGTCTGCACACCGACTTTGCCTG 244930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507014228882640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |