Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq17 86.0 6e-12 seq8 84.2 2e-11 >seq17 Length=605135 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||||||| || || | || || || || || |||||||| ||| Sbjct 221945 CCTCCACGGAGACGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 222004 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| ||||| || || || ||| |||| || || ||||||||||| || Sbjct 222005 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGG 222064 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || || | | || | ||||| | || || || Sbjct 222065 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACC 222124 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||| | || || || || || ||||| Sbjct 222125 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 222171 >seq8 Length=837966 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 50404 ACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGC 50463 ||||| ||||| ||| | || || |||||| |||||||| | || || ||||| | Sbjct 244767 ACTTTCGCCGAGCGTCTCGTCGCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCC 244826 Query 50464 TTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAAC 50523 || || |||| || | | || | || | |||||||| ||||| || |||| Sbjct 244827 TTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAAC 244886 Query 50524 GAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTG 50567 ||| | || |||||||||||||| ||||||| |||||||| || Sbjct 244887 GAGCTCATCTCGCGCGACGAAGGTCTGCACACCGACTTTGCCTG 244930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014228882640