Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq8 235 8e-57
seq19 190 3e-43
seq1 91.5 2e-13
seq4 89.7 8e-13
>seq8
Length=837966
Score = 235 bits (260), Expect = 8e-57
Identities = 410/577 (71%), Gaps = 26/577 (5%)
Strand=Plus/Plus
Query 125011 ATCATGACA--TTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGA 125068
||||| ||| | ||| |||||||||||||||| |||| ||||| ||||| | ||||||
Sbjct 244364 ATCATCACAGATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGA 244423
Query 125069 GGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAG 125127
| |||| || |||||||| || |||| ||||| | | | | || ||| || ||
Sbjct 244424 GATCGACCTTTCCAAGGATCTCCACGACTGGGACAACAAGCTCAACGACAAC-GAACGCC 244482
Query 125128 AGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC 125187
| ||||| |||||| | | |||||||| |||| ||||| || ||||||||||| || |
Sbjct 244483 ACTTTATCTCGCACGTCCTCGCCTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACC 244542
Query 125188 T-GTTGACACGATTCT-CTCAAGAGTTGACCATTC-CAGAGGTGTCGT-GCTTTTACGGA 125243
| || || || ||| ||| ||| || | | | | |||| |||| |||| |||||
Sbjct 244543 TCGTCGAG-CGTTTCAGCTCC-GAGGTG-CAAGCCGCCGAGGC-TCGTTGCTTCTACGGT 244598
Query 125244 TTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTAC 125303
||||| |||||||| |||||| | |||||||| | ||||| || || |||| |||
Sbjct 244599 TTCCAGATCATGATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACCTAC 244658
Query 125304 ATTCGCGATCC---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTC 125359
|||||||| || ||| || | | | |||||| |||| |||| || | || |||
Sbjct 244659 ATTCGCGAGCCCGAGCAGCGCGAGCTC---CTCTTTGACGCCGTCGAGACCATCCCCGTC 244715
Query 125360 TATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT---CTTCGTA 125416
| | | |||| | | |||| | | || |||||| ||||||| | | |
Sbjct 244716 GTCAAGCAGAAAGCCG-ACTGGGCGCTGCGATGGATCAG---CGACAAGCGCGCCACTTT 244771
Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGC 125476
|||||| | || || || || |||||||| || ||||||||||| || || || ||
Sbjct 244772 CGCCGAGCGTCTCGTCGCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCCTTCGC 244831
Query 125477 GGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536
||||||| ||||||||||||||||| ||||||||||| || || | |||||| |
Sbjct 244832 CTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCT 244891
Query 125537 TATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573
|| || || ||||| || || ||| |||||||||
Sbjct 244892 CATCTCGCGCGACGAAGGTCTGCACACCGACTTTGCC 244928
>seq19
Length=580969
Score = 190 bits (210), Expect = 3e-43
Identities = 327/472 (69%), Gaps = 2/472 (0%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || || | ||| | ||| | || || |||||| |||||
Sbjct 520612 CAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATTTACGTTGAGCCATGGCACTCGGAC 520553
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| ||||| || |||| | ||||| ||| ||| || |||| || ||| | ||
Sbjct 520552 GTCTTTGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTGCGTGCCCGAGAG 520493
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || |||||||||||||| ||| | ||||||||| | ||| | | ||| ||
Sbjct 520492 CTCTTCTACGCACTCTGGGTGCCCGATCTCTTCATGAAGAGGGTCGAGCAGAACGGCGAC 520433
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
||| || ||||||||| || || ||||| || | || |||| ||||| ||||||
Sbjct 520432 TGGTCGCTCATGTGCCCCAACGAGTGCCCCGGCCTCGCTGACTGCTACGGCGACGAGTTT 520373
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGA 97175
||| | ||| | ||||||| |||||||| | | | ||| | || | |
Sbjct 520372 GAGCGCCTCTACGAGCGCTACGAGGCCGAGGGCCGTGCCAAGCGCACCGTCAAGGC-CCA 520314
Query 97176 GAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTA 97234
||| || ||| | |||||| | | | ||| ||||| || | || | ||| |||||
Sbjct 520313 GAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCGGCAACCCCTTCATCCTCTA 520254
Query 97235 CAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAA 97294
||||||| ||| || ||||| |||||||| || | |||||||||||| |||||||
Sbjct 520253 CAAGGATGCCGCTAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAAGTGCTCCAA 520194
Query 97295 TCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346
||||||| || ||| | |||||| | | || |||||| ||| || |||
Sbjct 520193 CTTGTGCACCGAGATTATCGAGTACAGCGCCCCCGACGAGGTGGCTGTCTGC 520142
Score = 91.5 bits (100), Expect = 2e-13
Identities = 147/209 (70%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 98038 TCTACAAGACTGTCTGGGAGATTCCGAC-CAAGACGCTGATCGATATGGCTGCCGACAGA 98096
|||||||||| |||||||||| || | | ||| | | ||||| ||||| |||||| |
Sbjct 519436 TCTACAAGACCGTCTGGGAGA-TCAGCCAGAAGGCCATCATCGACATGGCCGCCGACCGT 519378
Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156
|||| | ||| |||| || ||| |||| | || | | | ||| |||| |
Sbjct 519377 GGTGCTTTCATCTGCCAGTCGCAGTCGCTCAACATTCACCTCTCGGCGCCTACCTTTGGC 519318
Query 98157 CGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216
| | || ||||| ||||| |||| ||||| ||||| |||||||| || | |||||
Sbjct 519317 CAGCTCACCTCGATGCACTTCTACGGCTGGAAGAAGGGTCTCAAGACCGGTACCTACTAC 519258
Query 98217 CTGAGAACAAAGTCGGCCACCAATGCCAT 98245
||| | || ||| | ||| |||| |||||
Sbjct 519257 CTGCGTACCAAGCCTGCCTCCAACGCCAT 519229
>seq1
Length=2009762
Score = 91.5 bits (100), Expect = 2e-13
Identities = 265/396 (67%), Gaps = 14/396 (4%)
Strand=Plus/Plus
Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955
|||||| | || |||||| ||||||| || ||||| ||||||||||| | ||| |
Sbjct 1710502 CCTCTGCTCACCACCAAGCGTGTCTTTTTCCGTGGCGTGCTCGAGGAGCTCCTCTGGTTT 1710561
Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGA-AAGGGTGTACACATTTGGAGCGG 70014
|| | || |||| || | ||| ||| | | || ||||| |||||||| ||| |||
Sbjct 1710562 GTTGCTGGCAAGACCGATTCGAAACTGCTCA-CAGATAAGGGCGTACACATCTGGGACGG 1710620
Query 70015 CAACAGTAGTCGAAGCGTTTTGGATTCGCTC-GGCT---TCACCGACAGACAAGAGGGCG 70070
|||| | || | | || |||| | |||| |||||| ||| ||| ||||
Sbjct 1710621 CAACGGATCGCGTGAATTCCTCGACTCGCGCGGGCTGTCTCACCG-CAG---AGAAGGCG 1710676
Query 70071 ATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCG 70130
| |||| || || ||||| ||||| ||| | |||| ||| | |||| ||| ||||
Sbjct 1710677 ACTTGGGCCCCGTCTACGGTTTCCAATGGCGACACTTTGGCGCAGAGTACACAGATTGCG 1710736
Query 70131 AGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACTCTCAAG 70189
| || |||| | ||||| || || |||||| | || | | | || |||| |||||
Sbjct 1710737 ATACCAACTACACCGGTCAAGGCGTCGATCAACTCGCTCA-AGTGATCGACAAGATCAAG 1710795
Query 70190 ACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAA 70249
| ||| || || || | | ||| | | || | ||||| || || | | |
Sbjct 1710796 AACAACCCTACCGACCGTCGCATCCTGCTCAGCGCCTGGAACCCCAAGGACCTCGAACTG 1710855
Query 70250 ATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTT 70284
||||| || || ||||| ||| ||||| || |||||
Sbjct 1710856 ATGGCGCTGCCGCCGTGCCACATGTTT-GCGCAGTT 1710890
>seq4
Length=1271980
Score = 89.7 bits (98), Expect = 8e-13
Identities = 173/254 (68%), Gaps = 6/254 (2%)
Strand=Plus/Plus
Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506
||||| || ||||| || ||| |||||| |||| |||||||| | | || || |
Sbjct 836819 CCGTGGGTAAGGTGACCACCGGAGGGCAGGCCGAGACCCATGATGCGGTCCTGGGGCTGG 836878
Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566
| || | ||| | |||||||||||| | ||||| ||||| || || || ||
Sbjct 836879 AGGAGCGCGGTGAAGGTGGCAAAGTTGGCGGTGGAGCCAGAGTAAGGCTGGACGTTGACG 836938
Query 127567 CCCCATTC---GGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGT 127623
||||| | || ||| | ||||| || ||||| |||||||| ||||
Sbjct 836939 CCCCACACCTTGGGGTCG---AGGTTGAAGGCCTTGAGAGCACGCTGCTGGCAGAGCACC 836995
Query 127624 TCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAG 127683
|||| | || || ||||||||||||| ||||| || ||||| |||||| |||
Sbjct 836996 TCGAGCTGGTCAATGTACTCGTTACCACCGTAGTAGCGGGCGCCGGGGAGACCCTCAGAG 837055
Query 127684 TACTTGTTGATGAG 127697
||||||||| ||||
Sbjct 837056 TACTTGTTGGTGAG 837069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058949892520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |