Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq8 235 8e-57 seq19 190 3e-43 seq1 91.5 2e-13 seq4 89.7 8e-13 >seq8 Length=837966 Score = 235 bits (260), Expect = 8e-57 Identities = 410/577 (71%), Gaps = 26/577 (5%) Strand=Plus/Plus Query 125011 ATCATGACA--TTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGA 125068 ||||| ||| | ||| |||||||||||||||| |||| ||||| ||||| | |||||| Sbjct 244364 ATCATCACAGATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGA 244423 Query 125069 GGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAG 125127 | |||| || |||||||| || |||| ||||| | | | | || ||| || || Sbjct 244424 GATCGACCTTTCCAAGGATCTCCACGACTGGGACAACAAGCTCAACGACAAC-GAACGCC 244482 Query 125128 AGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC 125187 | ||||| |||||| | | |||||||| |||| ||||| || ||||||||||| || | Sbjct 244483 ACTTTATCTCGCACGTCCTCGCCTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACC 244542 Query 125188 T-GTTGACACGATTCT-CTCAAGAGTTGACCATTC-CAGAGGTGTCGT-GCTTTTACGGA 125243 | || || || ||| ||| ||| || | | | | |||| |||| |||| ||||| Sbjct 244543 TCGTCGAG-CGTTTCAGCTCC-GAGGTG-CAAGCCGCCGAGGC-TCGTTGCTTCTACGGT 244598 Query 125244 TTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTAC 125303 ||||| |||||||| |||||| | |||||||| | ||||| || || |||| ||| Sbjct 244599 TTCCAGATCATGATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACCTAC 244658 Query 125304 ATTCGCGATCC---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTC 125359 |||||||| || ||| || | | | |||||| |||| |||| || | || ||| Sbjct 244659 ATTCGCGAGCCCGAGCAGCGCGAGCTC---CTCTTTGACGCCGTCGAGACCATCCCCGTC 244715 Query 125360 TATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT---CTTCGTA 125416 | | | |||| | | |||| | | || |||||| ||||||| | | | Sbjct 244716 GTCAAGCAGAAAGCCG-ACTGGGCGCTGCGATGGATCAG---CGACAAGCGCGCCACTTT 244771 Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGC 125476 |||||| | || || || || |||||||| || ||||||||||| || || || || Sbjct 244772 CGCCGAGCGTCTCGTCGCCTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCCTTCGC 244831 Query 125477 GGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536 ||||||| ||||||||||||||||| ||||||||||| || || | |||||| | Sbjct 244832 CTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCT 244891 Query 125537 TATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 || || || ||||| || || ||| ||||||||| Sbjct 244892 CATCTCGCGCGACGAAGGTCTGCACACCGACTTTGCC 244928 >seq19 Length=580969 Score = 190 bits (210), Expect = 3e-43 Identities = 327/472 (69%), Gaps = 2/472 (0%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| | ||| | || || |||||| ||||| Sbjct 520612 CAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATTTACGTTGAGCCATGGCACTCGGAC 520553 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || |||| | ||||| ||| ||| || |||| || ||| | || Sbjct 520552 GTCTTTGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTGCGTGCCCGAGAG 520493 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || |||||||||||||| ||| | ||||||||| | ||| | | ||| || Sbjct 520492 CTCTTCTACGCACTCTGGGTGCCCGATCTCTTCATGAAGAGGGTCGAGCAGAACGGCGAC 520433 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || ||||||||| || || ||||| || | || |||| ||||| |||||| Sbjct 520432 TGGTCGCTCATGTGCCCCAACGAGTGCCCCGGCCTCGCTGACTGCTACGGCGACGAGTTT 520373 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGA 97175 ||| | ||| | ||||||| |||||||| | | | ||| | || | | Sbjct 520372 GAGCGCCTCTACGAGCGCTACGAGGCCGAGGGCCGTGCCAAGCGCACCGTCAAGGC-CCA 520314 Query 97176 GAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTA 97234 ||| || ||| | |||||| | | | ||| ||||| || | || | ||| ||||| Sbjct 520313 GAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCGGCAACCCCTTCATCCTCTA 520254 Query 97235 CAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAA 97294 ||||||| ||| || ||||| |||||||| || | |||||||||||| ||||||| Sbjct 520253 CAAGGATGCCGCTAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAAGTGCTCCAA 520194 Query 97295 TCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 ||||||| || ||| | |||||| | | || |||||| ||| || ||| Sbjct 520193 CTTGTGCACCGAGATTATCGAGTACAGCGCCCCCGACGAGGTGGCTGTCTGC 520142 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGAC-CAAGACGCTGATCGATATGGCTGCCGACAGA 98096 |||||||||| |||||||||| || | | ||| | | ||||| ||||| |||||| | Sbjct 519436 TCTACAAGACCGTCTGGGAGA-TCAGCCAGAAGGCCATCATCGACATGGCCGCCGACCGT 519378 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| | ||| |||| || ||| |||| | || | | | ||| |||| | Sbjct 519377 GGTGCTTTCATCTGCCAGTCGCAGTCGCTCAACATTCACCTCTCGGCGCCTACCTTTGGC 519318 Query 98157 CGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216 | | || ||||| ||||| |||| ||||| ||||| |||||||| || | ||||| Sbjct 519317 CAGCTCACCTCGATGCACTTCTACGGCTGGAAGAAGGGTCTCAAGACCGGTACCTACTAC 519258 Query 98217 CTGAGAACAAAGTCGGCCACCAATGCCAT 98245 ||| | || ||| | ||| |||| ||||| Sbjct 519257 CTGCGTACCAAGCCTGCCTCCAACGCCAT 519229 >seq1 Length=2009762 Score = 91.5 bits (100), Expect = 2e-13 Identities = 265/396 (67%), Gaps = 14/396 (4%) Strand=Plus/Plus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955 |||||| | || |||||| ||||||| || ||||| ||||||||||| | ||| | Sbjct 1710502 CCTCTGCTCACCACCAAGCGTGTCTTTTTCCGTGGCGTGCTCGAGGAGCTCCTCTGGTTT 1710561 Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGA-AAGGGTGTACACATTTGGAGCGG 70014 || | || |||| || | ||| ||| | | || ||||| |||||||| ||| ||| Sbjct 1710562 GTTGCTGGCAAGACCGATTCGAAACTGCTCA-CAGATAAGGGCGTACACATCTGGGACGG 1710620 Query 70015 CAACAGTAGTCGAAGCGTTTTGGATTCGCTC-GGCT---TCACCGACAGACAAGAGGGCG 70070 |||| | || | | || |||| | |||| |||||| ||| ||| |||| Sbjct 1710621 CAACGGATCGCGTGAATTCCTCGACTCGCGCGGGCTGTCTCACCG-CAG---AGAAGGCG 1710676 Query 70071 ATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCG 70130 | |||| || || ||||| ||||| ||| | |||| ||| | |||| ||| |||| Sbjct 1710677 ACTTGGGCCCCGTCTACGGTTTCCAATGGCGACACTTTGGCGCAGAGTACACAGATTGCG 1710736 Query 70131 AGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACTCTCAAG 70189 | || |||| | ||||| || || |||||| | || | | | || |||| ||||| Sbjct 1710737 ATACCAACTACACCGGTCAAGGCGTCGATCAACTCGCTCA-AGTGATCGACAAGATCAAG 1710795 Query 70190 ACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAA 70249 | ||| || || || | | ||| | | || | ||||| || || | | | Sbjct 1710796 AACAACCCTACCGACCGTCGCATCCTGCTCAGCGCCTGGAACCCCAAGGACCTCGAACTG 1710855 Query 70250 ATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTT 70284 ||||| || || ||||| ||| ||||| || ||||| Sbjct 1710856 ATGGCGCTGCCGCCGTGCCACATGTTT-GCGCAGTT 1710890 >seq4 Length=1271980 Score = 89.7 bits (98), Expect = 8e-13 Identities = 173/254 (68%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 ||||| || ||||| || ||| |||||| |||| |||||||| | | || || | Sbjct 836819 CCGTGGGTAAGGTGACCACCGGAGGGCAGGCCGAGACCCATGATGCGGTCCTGGGGCTGG 836878 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || | ||| | |||||||||||| | ||||| ||||| || || || || Sbjct 836879 AGGAGCGCGGTGAAGGTGGCAAAGTTGGCGGTGGAGCCAGAGTAAGGCTGGACGTTGACG 836938 Query 127567 CCCCATTC---GGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGT 127623 ||||| | || ||| | ||||| || ||||| |||||||| |||| Sbjct 836939 CCCCACACCTTGGGGTCG---AGGTTGAAGGCCTTGAGAGCACGCTGCTGGCAGAGCACC 836995 Query 127624 TCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAG 127683 |||| | || || ||||||||||||| ||||| || ||||| |||||| ||| Sbjct 836996 TCGAGCTGGTCAATGTACTCGTTACCACCGTAGTAGCGGGCGCCGGGGAGACCCTCAGAG 837055 Query 127684 TACTTGTTGATGAG 127697 ||||||||| |||| Sbjct 837056 TACTTGTTGGTGAG 837069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058949892520