Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq11 100 2e-16 seq17 84.2 2e-11 >seq11 Length=790822 Score = 100 bits (110), Expect = 2e-16 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || ||||||||||| | || || || ||||||| |||||||| ||| | Sbjct 631701 CTCCTTCTGGATGTTGTAATCGGA-AAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAA 631643 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651 | || | |||||||||||| || | || |||||||| ||| || ||||| | Sbjct 631642 AGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGCCTTGACGT 631583 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || || || |||| ||||||| ||||| || || || |||||||| ||||| || Sbjct 631582 TGTCG--ATAGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTACCGGTCAGAGTCTT 631525 Query 48712 CACAAAAATCTGCAT 48726 ||||| |||||||| Sbjct 631524 GACAAAGATCTGCAT 631510 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||||||||| | | || | || | ||||||||||| ||||||||||| || | Sbjct 631965 ACCTCCGCGCAATCGAAGGACAAGGTGCAACGTGCTCTCCTTCTGAATGTTGTAGTCGGA 631906 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||| ||||||||||| || |||| | |||||||| || ||| Sbjct 631905 GAGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCAGGCGG 631846 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTC 48675 | || ||||||||| || || |||| || | || || || || | |||||| Sbjct 631845 GATACCCTCCTTGTCCTGGATCTT-GGCTTTCACATTGTCG--ATCGTGTCCGAAGACTC 631789 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||| || || || || ||||| || || || ||||||||||| Sbjct 631788 GACCTCCAGTGTGATCGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 631738 >seq17 Length=605135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| || || || || |||||| || |||||||| || | Sbjct 300014 ACCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 300073 Query 48559 CAAT-TGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | ||| || ||||||| ||||||||||| || | || | |||||||| || | Sbjct 300074 AAGGGTGTGGC-CGTCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGGGGG 300132 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| || || ||||| | | ||||| || | |||||| Sbjct 300133 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGA 300192 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||| ||||| ||||| || || || || ||||||||| || Sbjct 300193 CCTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTAACGAAGATCTGCATCTTG 300245 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | || || || || || || |||||| || |||||||| || | Sbjct 221944 ACCTCCACGGAGACGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 222003 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || ||||||| |||||||| || | | || | ||||||||||| | Sbjct 222004 AAGAGTGCGGC-CGTCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTG 222062 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | | ||||||||| || || ||||| | | || ||||| || | ||||| Sbjct 222063 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCAGAGGACTC 222120 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| || ||||||||||| || ||||| ||||||||| Sbjct 222121 GACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCATC 222172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251061382027