Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq11 100 2e-16
seq17 84.2 2e-11
>seq11
Length=790822
Score = 100 bits (110), Expect = 2e-16
Identities = 142/195 (73%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593
|||||| || ||||||||||| | || || || ||||||| |||||||| ||| |
Sbjct 631701 CTCCTTCTGGATGTTGTAATCGGA-AAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAA 631643
Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651
| || | |||||||||||| || | || |||||||| ||| || ||||| |
Sbjct 631642 AGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGCCTTGACGT 631583
Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711
| || || || |||| ||||||| ||||| || || || |||||||| ||||| ||
Sbjct 631582 TGTCG--ATAGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTACCGGTCAGAGTCTT 631525
Query 48712 CACAAAAATCTGCAT 48726
||||| ||||||||
Sbjct 631524 GACAAAGATCTGCAT 631510
Score = 93.3 bits (102), Expect = 4e-14
Identities = 161/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||||||||| | | || | || | ||||||||||| ||||||||||| || |
Sbjct 631965 ACCTCCGCGCAATCGAAGGACAAGGTGCAACGTGCTCTCCTTCTGAATGTTGTAGTCGGA 631906
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| || ||||||| ||||||||||| || |||| | |||||||| || |||
Sbjct 631905 GAGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCAGGCGG 631846
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTC 48675
| || ||||||||| || || |||| || | || || || || | ||||||
Sbjct 631845 GATACCCTCCTTGTCCTGGATCTT-GGCTTTCACATTGTCG--ATCGTGTCCGAAGACTC 631789
Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | ||| || || || || ||||| || || || |||||||||||
Sbjct 631788 GACCTCCAGTGTGATCGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 631738
>seq17
Length=605135
Score = 84.2 bits (92), Expect = 2e-11
Identities = 160/233 (69%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || |||| | | ||| || || || || |||||| || |||||||| || |
Sbjct 300014 ACCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 300073
Query 48559 CAAT-TGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
| ||| || ||||||| ||||||||||| || | || | |||||||| || |
Sbjct 300074 AAGGGTGTGGC-CGTCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGGGGG 300132
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | | ||||||||| || || ||||| | | ||||| || | ||||||
Sbjct 300133 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGA 300192
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
||||| || ||||| ||||| ||||| || || || || ||||||||| ||
Sbjct 300193 CCTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTAACGAAGATCTGCATCTTG 300245
Score = 82.4 bits (90), Expect = 6e-11
Identities = 160/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| || | | || || || || || || |||||| || |||||||| || |
Sbjct 221944 ACCTCCACGGAGACGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 222003
Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
| | || || ||||||| |||||||| || | | || | ||||||||||| |
Sbjct 222004 AAGAGTGCGGC-CGTCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTG 222062
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675
| | | ||||||||| || || ||||| | | || ||||| || | |||||
Sbjct 222063 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCAGAGGACTC 222120
Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||||| || ||||| || ||||||||||| || ||||| |||||||||
Sbjct 222121 GACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCATC 222172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421251061382027
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |