Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq23 140 2e-28
seq20 125 5e-24
>seq23
Length=140422
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 123996 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 123937
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 123936 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 123902
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 132160 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 132101
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 132100 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 132066
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 140324 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 140265
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 140264 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 140230
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 121989 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 121930
Query 20007 GGTAATATTTAGCCTTA 20023
||||||||||||||
Sbjct 121929 CCCAATATTTAGCCTTA 121913
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 130153 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 130094
Query 20007 GGTAATATTTAGCCTTA 20023
||||||||||||||
Sbjct 130093 CCCAATATTTAGCCTTA 130077
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 138317 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 138258
Query 20007 GGTAATATTTAGCCTTA 20023
||||||||||||||
Sbjct 138257 CCCAATATTTAGCCTTA 138241
>seq20
Length=573042
Score = 125 bits (138), Expect = 5e-24
Identities = 213/309 (69%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 6182 TCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGA 6241
|||| |||| | ||| ||||||||| ||| ||||| | | || |||| ||||
Sbjct 379732 TCGTGATGTCGACGACAAGTTCTACCGATACCGCATGCCTCTCCTCCAGACCAAAATCGA 379791
Query 6242 GGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCT 6301
||| ||||| |||||||| || |||||||| ||||||| | || | ||| | ||
Sbjct 379792 GGGCAAGGGCAACGGTATCAAGACCGTCATCCCCAACATGTCCGACATTGCTCGCTCCCT 379851
Query 6302 CGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCA 6361
| | || || | |||||||| || || | || || ||||| || |||||||||||
Sbjct 379852 CAGCCGTCCCCCGACCTACCCCACCAAGTTCTTTGGCTGCGAGCTCGGCGCTCAGACCTC 379911
Query 6362 GTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCA 6421
||| || | || ||||| || | ||| || ||||| | || || ||| | || |
Sbjct 379912 GTTCGACAAGAAGAACGATCGTTACATTGTCAACGGCGCTCACGACGCTGACCGTCTCCG 379971
Query 6422 GGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGA 6481
|| | || ||||| || || ||||||||| || || | || ||| | ||||| ||
Sbjct 379972 AGAGCTCCTCGACGGTTTCATCGACAAGTTTGTCCTCTGCGGCGACTGCAAGAACCCCGA 380031
Query 6482 GACCGAGCT 6490
|||||| ||
Sbjct 380032 GACCGATCT 380040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947089781437
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |