Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq23 140 2e-28 seq20 125 5e-24 >seq23 Length=140422 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 123996 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 123937 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 123936 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 123902 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 132160 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 132101 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 132100 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 132066 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 140324 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 140265 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 140264 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 140230 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 121989 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 121930 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||| Sbjct 121929 CCCAATATTTAGCCTTA 121913 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 130153 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 130094 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||| Sbjct 130093 CCCAATATTTAGCCTTA 130077 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 138317 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 138258 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||| Sbjct 138257 CCCAATATTTAGCCTTA 138241 >seq20 Length=573042 Score = 125 bits (138), Expect = 5e-24 Identities = 213/309 (69%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 6182 TCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGA 6241 |||| |||| | ||| ||||||||| ||| ||||| | | || |||| |||| Sbjct 379732 TCGTGATGTCGACGACAAGTTCTACCGATACCGCATGCCTCTCCTCCAGACCAAAATCGA 379791 Query 6242 GGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCT 6301 ||| ||||| |||||||| || |||||||| ||||||| | || | ||| | || Sbjct 379792 GGGCAAGGGCAACGGTATCAAGACCGTCATCCCCAACATGTCCGACATTGCTCGCTCCCT 379851 Query 6302 CGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCA 6361 | | || || | |||||||| || || | || || ||||| || ||||||||||| Sbjct 379852 CAGCCGTCCCCCGACCTACCCCACCAAGTTCTTTGGCTGCGAGCTCGGCGCTCAGACCTC 379911 Query 6362 GTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCA 6421 ||| || | || ||||| || | ||| || ||||| | || || ||| | || | Sbjct 379912 GTTCGACAAGAAGAACGATCGTTACATTGTCAACGGCGCTCACGACGCTGACCGTCTCCG 379971 Query 6422 GGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGA 6481 || | || ||||| || || ||||||||| || || | || ||| | ||||| || Sbjct 379972 AGAGCTCCTCGACGGTTTCATCGACAAGTTTGTCCTCTGCGGCGACTGCAAGAACCCCGA 380031 Query 6482 GACCGAGCT 6490 |||||| || Sbjct 380032 GACCGATCT 380040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947089781437