Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq8 210 2e-49 >seq8 Length=837966 Score = 210 bits (232), Expect = 2e-49 Identities = 384/559 (69%), Gaps = 5/559 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | ||||||||| || || || | ||| ||| ||| || | Sbjct 244931 GCAGGCAAAGTCGGTGTGCAGACCTTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAG 244872 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | || || || ||||||||||| || || || || || || || || || Sbjct 244871 ACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAA 244812 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || ||||| ||||| ||||| || || | ||| ||||| ||| | ||| || ||| Sbjct 244811 GATGCCTTCAACGGCGGCAAAGGCGACGAGACGCTCGGCGAAAGTGGCGCGCTTGTCGCT 244752 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 ||||||| | ||||| |||||||| | ||| | || | || |||| |||| Sbjct 244751 GATCCATCGCAGCGCCCAGTCGGCTTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTC 244692 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 ||| ||| || |||| || | || || ||||| || ||||| | || || || | Sbjct 244691 AAAGAGGAGCTCGCGCTGCTCGGGCTCGCGAATGTAGGTGTCGATGAGGAGCGAGTAGGT 244632 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 || || |||| |||||||| || ||||| |||||||| || | ||| || | | Sbjct 244631 CTCCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGC 244572 Query 93451 CTGCACTTCTTGAG-AAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 ||||| || ||| || | ||| ||||| || || ||||| ||||| ||||| || | Sbjct 244571 TTGCACCTC-GGAGCTGAAACGCTCGACGAGGTTCTCGTTGACGATACCGTCGGAAGCGG 244513 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTATCCC 93566 | || || || | | ||| ||||| || || | || || ||| || |||| Sbjct 244512 CGAAGAAGGCGAGGACGTGCGAGATAAAGTGGCGTTCGTTGTCGTTGAGCTTGTTGTCCC 244453 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 | ||| ||||| || ||||| |||| |||||| | ||||| || || || || || | Sbjct 244452 AGTCGTGGAGATCCTTGGAAAGGTCGATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCT 244393 Query 93627 TTTTGTACATATCCCATAT 93645 |||||||||| | ||| || Sbjct 244392 TTTTGTACATTTGCCAGAT 244374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860612059480