Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq12 91.5 3e-13 >seq12 Length=716888 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGC- 280237 |||||||| ||| |||||||||| ||||| |||| || | || || ||| || | Sbjct 212219 GGACCCAACGGTTCGGGTAAGTCGACCCTTGTCAAGCTCATCGTCGGTGACACCGAGCCT 212160 Query 280238 --CACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | ||| | | | |||||||| |||||| || || | ||||||||| |||||| Sbjct 212159 GGCTCTGGTGAGA---TGTGGAAGCACCCCAACTTGGTCATCGGTTACGTCGCCCAGCAC 212103 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 || ||||||||||| || | ||||| |||| ||| ||| | | ||||| | ||||| Sbjct 212102 GCCTTCCACCACATTGACCAGCACCTCGACAAGACCCCTCTCGACTACATGCTCTGGCGT 212043 Query 280356 TA 280357 || Sbjct 212042 TA 212041 Score = 84.2 bits (92), Expect = 4e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| || || |||| | ||||||||||| || |||| ||||| ||||| ||| Sbjct 213053 GGCGAGGACCTTTGCAACTGCCAGTTCTCGCTCGCCTACGGTGCCAAGATCCTGCTCAAC 212994 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || || ||| ||||||||||| || ||| |||||| ||||| || || | Sbjct 212993 ACTGCCACCCTGCGTCTCAAGCGTGGCCACAAGTACGGTCTCTGCGGTCGTAACGGTTCC 212934 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCT 279518 || ||| || || ||||| ||||| | ||||| ||| | || || || ||| Sbjct 212933 GGAAAGTCGACCCTCATGCGTGCCATCACCAACGGCCAGGTCGAGGGTTTCCCT 212880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836444432707