Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq17 188 1e-42
seq11 158 2e-33
seq19 127 4e-24
seq8 100 5e-16
>seq17
Length=605135
Score = 188 bits (208), Expect = 1e-42
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || ||||| |||||||| ||||| ||||| || |||||||| || |||||
Sbjct 221945 CCTCCACGGAGACGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 222004
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || || || || |||| || || ||||||||
Sbjct 222005 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGG 222064
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||||||||||||||| ||||| ||||||||| ||||||||||| | || || ||
Sbjct 222065 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACC 222124
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || ||||| ||||| || || ||||||||
Sbjct 222125 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 222171
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||||||| || || ||||| || |||||||| || || ||
Sbjct 300015 CCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 300074
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || || || || | |||||| || ||||| || || | || |||||||| ||
Sbjct 300075 AGGGTGTGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 300134
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| |||||||| ||||||||||| | || || ||
Sbjct 300135 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACC 300194
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || |||||||||||||| ||||| ||||||||
Sbjct 300195 TCGAGAGTGATGGTCTTACCCGTGAGGGTCTTAACGAAGATCTGCAT 300241
>seq11
Length=790822
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| ||| || || ||||| || |||||||| ||||||||
Sbjct 631736 CCACCACGGAGACGGAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAA 631677
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| ||||| || ||||| | || || || |||||
Sbjct 631676 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGTGGG 631617
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||||||||| ||||||||| ||||| ||||| | || || ||
Sbjct 631616 ATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAAGACTCCACC 631557
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || || || || |||||||| || ||||||||
Sbjct 631556 TCGAGGGTGATCGTCTTACCGGTCAGAGTCTTGACAAAGATCTGCAT 631510
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|||||||| | || | || | ||| | |||| ||| || || ||||| || ||||||
Sbjct 631964 CCTCCGCGCAATCGAAGGACAAGGTGCAACGTGCTCTCCTTCTGAATGTTGTAGTCGGAG 631905
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| ||||||| || ||||| || ||
Sbjct 631904 AGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCAGGCGGG 631845
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| || || || ||||| ||||| | || || ||
Sbjct 631844 ATACCCTCCTTGTCCTGGATCTTGGCTTTCACATTGTCGATCGTGTCCGAAGACTCGACC 631785
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct 631784 TCCAGTGTGATCGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 631738
>seq19
Length=580969
Score = 127 bits (140), Expect = 4e-24
Identities = 871/1377 (63%), Gaps = 46/1377 (3%)
Strand=Plus/Plus
Query 30794 AATGGCGTTTGCAGCAGGCTTGCTTCTGCAG-TAATACATAAGCGTCTTGAGACCCTTCT 30852
||||||||| | ||||||||| | | |||| || || || ||||||||||||||||
Sbjct 519228 AATGGCGTTGGAGGCAGGCTTGGTAC-GCAGGTAGTAGGTACCGGTCTTGAGACCCTTCT 519286
Query 30853 TCCATGCATAGAACAGCATGGAAGACAT-TGACTTCATAGAG-GGCGCTGCAACGAAGAG 30910
|||| | ||||| |||| || | | || | || || ||||| | | | |
Sbjct 519287 TCCAGCCGTAGAAGTGCATCGAGGTGAGCTGGC--CAAAGGTAGGCGCCGAGAGGTGAAT 519344
Query 30911 GTTCATGCTCTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAATGACGGT 30970
||| | ||| | |||| | || | ||| ||||| || || | ||| |||| ||
Sbjct 519345 GTTGAGCGACTGCGACTGGCAGATGAAAGCACCACGGTCGGCGGCCATGTCGATGATGGC 519404
Query 30971 CTTCATAGACAGCTCCCATGCGGTCTTGTAGATTGCCTTGA-GCTCAGGGTGGATGCCAA 31029
|||| | |||||| |||||||||||| ||||| || || |||||||
Sbjct 519405 CTTCTGGCTGATCTCCCAGACGGTCTTGTAGAGCTTCTTGATGCGGTCGG-GGATGCCG- 519462
Query 31030 TGACACGTT--GGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCA 31087
| |||||| ||||||| || |||| || || || |||||||||| | ||| |||
Sbjct 519463 -GGCACGTTCTGGATGGAACCGCCGTGAGCGATGATGCGGTTCTTCATCGTGTCGTTCCA 519521
Query 31088 CGTGCCACGAGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGC 31147
| || | ||| ||| ||||| | | | ||| ||||| ||||||| || ||
Sbjct 519522 CAGACCCTGCTCGACGAGCTCGCGGAGCAACCAAGGGTTCACCACCTGGAACTCACCGGC 519581
Query 31148 AAGGGTCCGGCGGCTGTACAGATTAGAAGTGATCGGCTCCATAGC-CTCTACGGACCCGC 31206
|| || || ||| | || || ||| ||||| | ||| ||| | | |||
Sbjct 519582 GAGCACACGACGCGAGTAGATGTTGGACGTGTAAGGCTCGA-AGCACTCGTTGAAGCCGA 519640
Query 31207 AGATTTGCGCGGTGGATGCGGTGGGCATCAGCGCGGTGGTCAGCGAATTCCTGACACCCT 31266
||| || ||| || ||||||||||| | ||| ||||| || | | ||| |
Sbjct 519641 GGATCTGACTGGTCGAGGCGGTGGGCATGGGAGCGAGCAGAAGCGAGTTGCGCAGACCGT 519700
Query 31267 TCTTGACGCGCTCTTCGAGGGTCTTC----CAGTCAAGGC---GAGTTACCGGCTCGGTT 31319
|||| ||| |||| || ||| | | | || | ||| | ||| |||
Sbjct 519701 GCTTG--GCGATCTT----GGCCTTGAGCTCGGCCCAGTCCCAGAGGT-CCGAGGGGGTG 519753
Query 31320 CC--CCAGAGGTGATACTGCATCACACCACGAGACGCGGGAGACCCCTCAAAGGTAGGAT 31377
| ||| | || ||||||| | |||| | || ||||| || || | |||| |
Sbjct 519754 ACGCCCACATGTCGTACTGCAGCTCACCCTGCGAAGCGGGCGAGCCGGCGTAGGTCTCGT 519813
Query 31378 GGGGACCGTGCTCTTCCGCGAGTTCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCT 31437
|| ||||||| | || || ||||| || ||| | || || ||| || |||
Sbjct 519814 AGGTGCCGTGCTGCTGAGCCAGCTCGCACGATCGCTCGAGAGCGGCGTGGTAGATGGTCT 519873
Query 31438 CAAAGATTTCCCGGTTGAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCAT-GCGCAGCTTG 31496
| ||||| | | |||||| ||| || ||| ||||| ||| | || || |
Sbjct 519874 CGAAGATATGCACGTTGAGACGACGAGCCTCGGGAGACTCAAA-GGCGTAGCCCATGATC 519932
Query 31497 AAGAACACGTCCTGAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTAC-T 31555
| ||| |||| ||||||||||||||| | || || || || |||||||||| |
Sbjct 519933 ATGAAGGCGTCGGCAAGACCCTGGACACCGATACCGATGGGACGGTGGCGCATGTTGGAT 519992
Query 31556 AGTCTTCGCCTCGGGAATTGCGTAGGACATGACGTCAATGCTCTTGTCGAGGTTCTTGGC 31615
| | ||||| | | |||| | ||| ||| ||| |||||| |||||||||
Sbjct 519993 CGACGG-GCCTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTTAAGGTTCTTG-- 520049
Query 31616 CAGAAT--CTTCACGTGCTTGCGAAGGTCCTCAAAGTCGTA------GGCACCGTTCTTG 31667
|||| ||| || || | | || | |||||||| ||| || | |
Sbjct 520050 CAGATGGCCTTGGCGACCTCGTGCAGACGTTTGAAGTCGTACGTCTTGGCGACGGGGTCG 520109
Query 31668 ACGTAGTTCTGGAGGACGAT-GCTTCCAATGACACACACCGCCGTTTCGTCCGTAGAAGT 31726
| | || | ||||| |||| | |||| | || || ||| ||||| | | |
Sbjct 520110 ATGAAGGTGGGGAGGGCGATCGAGGCCAA-GTTGCAGACAGCCACCTCGTCGGGGGCGCT 520168
Query 31727 GTATTCGACAATCTCGGCACAAAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGCAT 31786
||| |||| |||||||| || | ||| || | ||||||||||| || ||| |
Sbjct 520169 GTACTCGATAATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTT 520228
Query 31787 GTTCTTCACGTTCACGCTGTCCTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTGCGT 31846
| |||| ||| || ||||||| ||| | | | || |||| |||||| ||||||
Sbjct 520229 GCTCTTGCGGTTAGCGGCATCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCGGTCTGCGA 520288
Query 31847 GATGATCATCGCATTCCAGACATCGCGCGCTTTGACGACTTTCTTCGCACGCCCCTCGGA 31906
|| || || | ||||| | | || |||||| ||| ||||| |||||||
Sbjct 520289 CTCGAGGATGGCGTACCAGAGCTTCTGGGCCTTGACGGTGCGCTTGGCACGGCCCTCGGC 520348
Query 31907 CTCGTAGCGAAGATACAGGTCCTCGTACTCCTTGCCAAAGGCATCGGTTAGACCGGGACA 31966
||||||||| || ||| ||| |||| | ||| || || | || ||||| ||
Sbjct 520349 CTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCGCCGTAGCAGTCAGCGAGGCCGGGGCA 520408
Query 31967 CTCCTTGGGGTCGAAGAGCGACCATGCGACATCGGCCTCTACTCGCTTCATGAACAGGTC 32026
||| |||||| | ||||||||| || | | ||| || | ||||||||| || ||
Sbjct 520409 CTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATC 520468
Query 32027 GTTCAGCCACATCGCGTAAAACAGATTCCTGGCGCGTTGGGTCTCCTCACCCTGGTTACG 32086
| || ||| | ||||| || || | | ||| || ||||| || |||||
Sbjct 520469 GGGCACCCAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTGCCGTGGTTCTT 520528
Query 32087 TCGGAGCAGCAGGAAGTCCATGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCGAA 32143
||||| ||||| || | || ||| | ||| ||||| | ||| | ||| ||
Sbjct 520529 GCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAACGTAAATGGCAAA 520585
>seq8
Length=837966
Score = 100 bits (110), Expect = 5e-16
Identities = 360/554 (65%), Gaps = 37/554 (7%)
Strand=Plus/Minus
Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312
||| || || |||||||| ||||| ||||||||| || |||||||||||||| ||
Sbjct 244916 GTGCAGACCTTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACC 244857
Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCTCCACG 10370
|| || |||||||| |||| | ||| || ||||||| |||||| || || |||
Sbjct 244856 GCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGA--AGAAGATGCCTTCAACG 244799
Query 10371 CACACCCAGGCGACGAGGCGCTCTGCGAA---GGAGCGGTCG-CGCGAAAAGTATTTCG- 10425
| |||||||||| ||||| ||||| || ||| | | ||| | | |||
Sbjct 244798 GCGGCAAAGGCGACGAGACGCTCGGCGAAAGTGGCGCGCTTGTCGCTGA---TCCATCGC 244742
Query 10426 AG-GCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTC---GAAGAGC 10481
|| ||||| | || |||| ||| | ||||| ||||||| || || || ||||
Sbjct 244741 AGCGCCCAGTCGGCTTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCAAAGAGGAGC 244682
Query 10482 TTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCTCGCTG 10541
| | |||||| |||| ||| | || | ||| || ||||| ||| |
Sbjct 244681 TCGCGCTGCTCGGGCTCG---CGAATGTAGGTGTCGATGAGGAGCGAGTAGGTCTCCGAG 244625
Query 10542 TGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAGGGGTCCGTGACT 10601
|||| | |||| | |||| || ||||||| ||| ||| || | | ||
Sbjct 244624 TGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCC------TCGGCGGCT 244571
Query 10602 T---CCTCGGCAAAGTTG------TTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCT 10652
| |||||| || || | | |||||||| | || || || ||| |
Sbjct 244570 TGCACCTCGG---AGCTGAAACGCTCGACGAGGTTCTCGTTGACGATACCGTCGGAAGCG 244514
Query 10653 GCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGC 10712
|| |||||| |||||| |||| ||| |||||||| || | ||||| || || | |
Sbjct 244513 GCGAAGAAGGCGAGGACGTGCGAGATAAAGTGGCGTTCGTTGTCGTTGAGCTTGTTGTCC 244454
Query 10713 CAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCC 10772
||||| | ||||| | || | || ||| || |||||||||| | || |||||
Sbjct 244453 CAGTCGTGGAGATCCTTGGAAAGGTCGATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCC 244394
Query 10773 TTCTTGTACATCTG 10786
|| |||||||| ||
Sbjct 244393 TTTTTGTACATTTG 244380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622088952440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |