Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq19 540 2e-148 seq8 333 5e-86 >seq19 Length=580969 Score = 540 bits (598), Expect = 2e-148 Identities = 1434/2154 (67%), Gaps = 90/2154 (4%) Strand=Plus/Plus Query 243741 TGAACTGGACGG-GTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGT 243799 ||||||| | || || || ||| | |||||| | ||||||||| | ||||||||||| Sbjct 519221 TGAACTGAATGGCGTTGGA-GGCAGGCTTGGTACGCAGGTAGTAGGTACCGGTCTTGAGA 519279 Query 243800 CCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCG 243859 || | |||| ||| || |||||| | || |||| || ||| | Sbjct 519280 CCCTTCTTCCAGCCGTAGAAGTGCATCGAGGTGAGCTG-----------GCCAAAGGTAG 519328 Query 243860 TCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCG 243919 | || | || | |||||| ||||| |||| || ||| | | || || ||| Sbjct 519329 GCGCCG-AGAGGTGAATGTTGAGCGACTGCGACTGGCAGATGAAAGCACCACGGTCGGCG 519387 Query 243920 GCCATGGTGATGAGGTCCTTCTGA--GATATCTCATACGCCGTCTTGTAGATGGGCTTGA 243977 |||||| ||||| | ||||||| ||| || || ||| |||||||||| ||||| Sbjct 519388 GCCATGTCGATGATGGCCTTCTGGCTGATCTCCCAGACG--GTCTTGTAGAGCTTCTTGA 519445 Query 243978 GGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGC 244037 | | ||||||| || | |||||| | || || ||| |||||| || | Sbjct 519446 TGCGGTCGGGGATGCCGGGCACGTTCTGGATGGAACCGCCGTGAGCGATGATGCGGTTCT 519505 Query 244038 GCATGTTATCGTTCCACAGGCCC------AAGCGCTCCAGCGCCTCGACCAGGTGCCTGT 244091 ||| | ||||||||||| ||| | | |||| ||| | |||| | | | Sbjct 519506 TCATCGTGTCGTTCCACAGACCCTGCTCGACGAGCTC--GCGGAGCAACCAAGGG----T 519559 Query 244092 TCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCT 244151 |||||||||| ||||| || | ||||| || ||| ||||| |||| || |||| Sbjct 519560 TCACCACCTGGAACTCACCGGCGAGCACACGACGCGAGTAGATGTTGGACGTGTAAGGCT 519619 Query 244152 CGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCA 244211 ||| || ||| || ||| || ||||| || || || |||||||| | | || Sbjct 519620 CGAAGCACTCGTTGAAGCCGAGGATCTGACTGGTCGAGGCGGTGGGCATGGGAGCGAGCA 519679 Query 244212 GCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACA 244271 | || ||| | || |||||| | ||| | |||||||| ||||||||| | Sbjct 519680 GAAGCGAGTTGCGCAGACCGTGCTTGGCGATCTTGGCCTTGAGCTCGGCCCAGTCCCAGA 519739 Query 244272 TGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGA 244331 | ||||| || ||| |||| ||||||| |||||||| |||| || | Sbjct 519740 GGTCCGAGGGGG---------TGACGCCC-ACATGTCGTACTGCAGCTCACCCT-GCGAA 519788 Query 244332 CGGGGCT-GCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCG 244390 |||| ||| |||||||| ||||| |||| |||| ||||||| || | ||| Sbjct 519789 GCGGGCGAGCCGGCGTAGGTCTCGTAGGTGCCGTGCTGCTGAGCCAGCTCGCA-CGATCG 519847 Query 244391 -TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCG-CGGGCCTTGC 244448 ||||| ||||||| |||||||||||||||||| | ||| | | || || |||| | Sbjct 519848 CTCGAGAGCGGCGTGGTAGATGGTCTCGAAGATATGCACGTTGA-GACGACGAGCCTCGG 519906 Query 244449 CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508 | |||| | |||||| ||||||||| ||||||| || ||||| || ||||| | Sbjct 519907 GAGACTCAAAGGCGTAGCCCATGATCATGAAGGCGTCGGCAAGACCCTGGACACCGATAC 519966 Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 ||||||| | ||| ||| ||||||| || ||| || |||||||| ||||| || Sbjct 519967 CGATGGGACGGTGGCGCATGTTGGATCGACGGGCCTCCTCGACGGGGTAGTAGTTGATGT 520026 Query 244569 CGATCACCTTGTTGAGGTT---GCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625 |||| | |||||| ||||| || | || | || |||| ||| ||| | | | Sbjct 520027 CGATGATCTTGTTAAGGTTCTTGCAGATGGCCTTGG---CGACCTCGTGCAGACGTTTGA 520083 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 |||||||| || || ||||| || | || | || | |||||||| Sbjct 520084 AGTCGTAC--GT-------CTTGGCGACGGGG-TCG--ATGAAGGTGGGGAGGGCGATCG 520131 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 ||||| ||||||||| |||||||| || | | | |||||| || |||||||||||| | Sbjct 520132 AGGCCAAGTTGCAGACAGCCACCTCGTCGGGGGCGCTGTACTCGATAATCTCGGTGCACA 520191 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 ||| ||||||||||||||| |||| || || ||| |||| ||| ||| |||| Sbjct 520192 AGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTAGCGGCATCCT 520251 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 ||||||| |||||||| ||||||||| ||| | |||||| | || |||||| | Sbjct 520252 TGTAGAGGATGAAGGGGTTGCCGGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCT 520311 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | |||||||| || | || |||||| ||||||||||| ||| ||| || Sbjct 520312 TCTGGGCCTTGACGGTGCGCTTGGCACGGCCCTCGGCCTCGTAGCGCTCGTAGAGGCGCT 520371 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 | |||||| ||| || || | |||||||||||| ||||||||||| || Sbjct 520372 CAAACTCGTCGCCGTAGCAGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGCGACC 520431 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | |||||| | || |||||||| ||||||||| ||||| | |||||| || | ||||| Sbjct 520432 AGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCGGGCACCCAGAGTGCGTAGAAGA 520491 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | || | | ||| ||| ||| |||||| | || || | || ||||||| Sbjct 520492 GCTCTCGGGCACGCACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCAAAGA 520551 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 |||| |||||| ||||| | ||| | || | ||| ||||| ||||||||||| |||| Sbjct 520552 CGTCCGAGTGCCATGGCTCAACGTAAATGGCAAAGGCACCGGGACGCTTGTTGCCACCCT 520611 Query 245166 GGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 |||| | | | || ||| |||||||| ||| || | ||||| || ||||| Sbjct 520612 GGTCGA----CGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGCACGATACCGTTG 520667 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATG 245281 | |||||||| || ||||||| || |||| | || | | |||| | | Sbjct 520668 CTGACACCGTTGGTACCGGCAATGTAGGAACCGGTGCCGCGGATGCAGTGGATGTTGAGG 520727 Query 245282 CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCC 245341 || | || |||||| ||||||||| | ||| || |||||| ||||| ||||| Sbjct 520728 CCGATACCACCGGCGGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCA 520787 Query 245342 TCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTG 245401 || || ||| ||||||| ||| || ||||| || || ||||| || | ||| | Sbjct 520788 TCGATCGAGTCGTCCTTCATGGTGACGAGGAAGCACGACGAGAGCTGAGGGTGCGGGGTA 520847 Query 245402 CACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTAC 245461 | | |||||| || |||||| |||||| |||||||| ||| | || ||| Sbjct 520848 CCTGCGTTGAAGAGGGTGGGGGAGGCGTGTGTAAAGTACTTTTGCGACATGAGGTTGTAG 520907 Query 245462 GTCTGGAGCAGAGC-GTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGT 245520 |||| | | || ||||||| | ||||||||| | |||| | |||||| | Sbjct 520908 GTCT-CAATGGCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACACGCATGAGCAT 520966 Query 245521 GTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGAGC 245578 ||||||||| ||| || | || | || | ||| | |||||||||||||||| Sbjct 520967 GTGCTGGGGACGCTC--TGCGACCTTGCCGTTGATGCGGAGGAGGTAGGAGCGCTCGAGC 521024 Query 245579 GTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGT 245638 |||||||| || ||| | |||| |||||| | || ||| ||| | |||||| Sbjct 521025 GTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCGAGTCGAGC 521084 Query 245639 CTCTCGGCGTGCTTC-TGACTGACCTCGTAAAACTTTTGCGCTATGAGGGGAGCCCTGA- 245696 || ||||| | |||| ||||| ||| | || || | ||| || ||| Sbjct 521085 TGGTCCTTGTGCTCCATGAC-GACCTTGTAGGTGGCGTCCGAGATCATGGG-GCTGTGAC 521142 Query 245697 GCCCGGTGTCCGGATTGACGTTGAACCAGAGCCTCTTGCAC-ACCTCCGAGAACTTGGGG 245755 | ||| | | || ||||||| |||| || || || |||| || || Sbjct 521143 GGCCGTTCTTGGGGTTGACGTACTCGTAGAG-GTCCTGGACGACCTGGCTAAAGTTCTTC 521201 Query 245756 CTGGTGAGCTTATGCAGGTTGGTGACTGCTATGCGCGCCGCCA--ACTTGCTGTAGTCGG 245813 |||| ||| |||| |||| ||| || || |||||||| | || || |||||| | Sbjct 521202 TTGGTCTCCTTGTGCAAGTTGCTGATGGCGATACGCGCCGCGAGGAC-AGC-GTAGTCTG 521259 Query 245814 GGTGAGTGGTGGTCATGTTGGAGGCCGTGTGGGCCAGC-AGCTCGTCAATCTCG 245866 |||| ||||||||| ||| || ||| || | || |||| || | ||| | |||| Sbjct 521260 GGTGGGTGGTGGTCTTGTAGGCGGCGGTCTCGG-CAGCAAGGTTGTCGAGCTCG 521312 >seq8 Length=837966 Score = 333 bits (368), Expect = 5e-86 Identities = 600/857 (70%), Gaps = 30/857 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||| ||||| || ||| |||||||||||| ||||| ||||| Sbjct 244374 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATCGACCTT 244433 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCT--GAGAACGAAA---AGTTTTTCCTC 42413 ||||||| || |||||| || || || |||||| | ||| || || Sbjct 244434 TCCAAGGATCTCCACGACTGGGACAACAAGCTCAACGACAACGAACGCCACTTTATC-TC 244492 Query 42414 AAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACC 42473 | | | || |||||||||||||| || ||||| || ||||| |||||||| | | Sbjct 244493 GCA--CGTCCTCGCCTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTCGTCGAG 244550 Query 42474 AGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCC 42533 | |||| |||||||| | ||||| || ||||||||||| |||||||| Sbjct 244551 CGTTTCAGCTCCGAGGTGCAAGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATG 244610 Query 42534 ATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCC 42593 || |||||| | ||||| ||| ||| | || || |||| ||||| | || ||| Sbjct 244611 ATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACCTACATTCGCGAGCCC 244670 Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653 | |||| | || || | ||| | ||||| || ||| | ||||| |||| || Sbjct 244671 GAGCAGCGCGAGCTCCTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGCAGAAAGCC 244730 Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGC 42712 ||||||||||| |||||| || | | | ||| || |||| |||| | || || || Sbjct 244731 GACTGGGCGCTGCGATGGATC-AGCGACAAGCGCGCCACTTTCGCCGAGCGTCTCGTCGC 244789 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 |||| ||||||| || |||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 244790 CTTTGCCGCCGTTGAAGGCATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAA 244849 Query 42773 GCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || ||| || |||||||| ||||||||||| ||||| |||||| | ||||| | Sbjct 244850 GAAGCGCGGTCTC-ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAAG 244908 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891 | ||||| | ||||||||||||||||| ||| |||||||||| | |||| | | Sbjct 244909 GTCTGCACACCGACTTTGCCTGCCTCCTCTTC---AGCCACCTCA---AGAAGCGCGCAC 244962 Query 42892 A---GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 | ||| || | |||||||| | ||||| || |||||| ||||||| | | Sbjct 244963 ACCCGGACACCGTGCTCAAAATCATCACCCAAGCCGTCGACATCGAGGTGGAGTTCTTGA 245022 Query 42949 CGCAGTCGCTGCCCGTGTC-CCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATC 43007 | | | | ||| |||| ||| |||| ||| ||| |||| |||||||||| Sbjct 245023 C-TACTGCCATCCCCTGTCGCCTCCTCGGTATGTCGAGCGAGGCCATGCACAAGTACATC 245081 Query 43008 CAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCG--CCTCTACAACACG 43064 ||||||||||||| | | || || | | | || | ||| | |||| | | Sbjct 245082 AAGTACGTCGCCGATCGCTTGCTCGTTTC-GCTCGG--AAATCCGGTTCACTACGGCGAG 245138 Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAG 43124 ||||| ||||| || ||| |||||||||| ||||| || |||||||||||||||||| Sbjct 245139 AGCTGCCCGTTCGATTTCATGCAGAACATCTCATTGGAAGGTAAGACCAACTTTTTCGAG 245198 Query 43125 AAGCGCGTCGCCGACTA 43141 ||| ||||| || || Sbjct 245199 AAGAAGGTCGCAGAGTA 245215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338881285520